RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 KRTAP2-3P0C7H8 128 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 EIF5AL1Q6IS14 154 aaKnown RBP0.37□□□□□ -2.35
CLK1-209ENST00000472679 PATE2Q6UY27 113 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 MUCL1Q96DR8 90 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 CCDC94Q9BW85 323 aaPredicted RBP0.37□□□□□ -2.35
CLK1-209ENST00000472679 KRTAP2-4Q9BYR9 128 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 KRTAP2-1Q9BYU5 128 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 WFDC10AQ9H1F0 79 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 OPTCQ9UBM4 332 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 KMT2DO14686 5537 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 CREBBPQ92793 2442 aa0.37□□□□□ -2.35
CLK1-209ENST00000472679 FLNCQ14315 2725 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 KALRNO60229 2985 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 PTPRFP10586 1907 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 MDN1Q9NU22 5596 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 GCN1Q92616 2671 aaKnown RBP0.36□□□□□ -2.35
CLK1-209ENST00000472679 RFX7Q2KHR2 1363 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 DOCK4Q8N1I0 1966 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 PCNTO95613 3336 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 CELSR3Q9NYQ7 3312 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 MGAMO43451 1857 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 MYO5AQ9Y4I1 1855 aaKnown RBP0.36□□□□□ -2.35
CLK1-209ENST00000472679 GGCTO75223 188 aaKnown RBP0.36□□□□□ -2.35
CLK1-209ENST00000472679 HLA-EP13747 358 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 GLIPR1L1Q6UWM5 242 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 DGCR14Q96DF8 476 aaKnown RBP0.36□□□□□ -2.35
CLK1-209ENST00000472679 C9orf16Q9BUW7 83 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 NIT2Q9NQR4 276 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 AKAP13Q12802 2813 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 NUP98P52948 1817 aa0.36□□□□□ -2.35
CLK1-209ENST00000472679 FLNAP21333 2647 aaKnown RBP0.35□□□□□ -2.35
CLK1-209ENST00000472679 BSNQ9UPA5 3926 aa0.35□□□□□ -2.35
CLK1-209ENST00000472679 FANCMQ8IYD8 2048 aa0.35□□□□□ -2.35
CLK1-209ENST00000472679 HIVEP3Q5T1R4 2406 aa0.35□□□□□ -2.35
CLK1-209ENST00000472679 USP9YO00507 2555 aaPredicted RBP0.35□□□□□ -2.35
CLK1-209ENST00000472679 C17orf112F2Z3M2 114 aa0.35□□□□□ -2.35
CLK1-209ENST00000472679 PPYP01298 95 aa0.35□□□□□ -2.35
CLK1-209ENST00000472679 TEX37Q96LM6 180 aa0.35□□□□□ -2.35
CLK1-209ENST00000472679 FASNP49327 2511 aaKnown RBP0.35□□□□□ -2.35
CLK1-209ENST00000472679 NSD1Q96L73 2696 aaPredicted RBP0.35□□□□□ -2.35
CLK1-209ENST00000472679 CACNA1EQ15878 2313 aa0.35□□□□□ -2.35
CLK1-209ENST00000472679 ZANQ9Y493 2812 aa0.34□□□□□ -2.35
CLK1-209ENST00000472679 REV3LO60673 3130 aa0.34□□□□□ -2.35
CLK1-209ENST00000472679 SZT2Q5T011 3432 aa0.34□□□□□ -2.35
CLK1-209ENST00000472679 FREM3P0C091 2139 aa0.34□□□□□ -2.35
CLK1-209ENST00000472679 SONP18583 2426 aaKnown RBP0.34□□□□□ -2.35
CLK1-209ENST00000472679 SERPINA1P01009 418 aa0.34□□□□□ -2.36
CLK1-209ENST00000472679 S100A7AQ86SG5 101 aa0.34□□□□□ -2.36
CLK1-209ENST00000472679 ZNF431Q8TF32 576 aaPredicted RBP0.34□□□□□ -2.36
CLK1-209ENST00000472679 MED29Q9NX70 200 aa0.34□□□□□ -2.36
CLK1-209ENST00000472679 ZFYVE26Q68DK2 2539 aa0.34□□□□□ -2.36
CLK1-209ENST00000472679 UBR5O95071 2799 aaPredicted RBP0.34□□□□□ -2.36
CLK1-209ENST00000472679 MIA2Q96PC5 1412 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 HERC2O95714 4834 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 CEP295Q9C0D2 2601 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 JMJD7-PLA2G4BH0Y9G9 81 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 C1QBP02746 253 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 OR10J4P0C629 311 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 HSPE1P61604 102 aaKnown RBP0.33□□□□□ -2.36
CLK1-209ENST00000472679 TMEM14EPQ6UXP3 125 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 OR5AS1Q8N127 324 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 EXOC3-AS1Q8N2X6 119 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 OR5D16Q8NGK9 328 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 MEGF8Q7Z7M0 2845 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 NBEAL1Q6ZS30 2694 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 CEP164Q9UPV0 1460 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 POLQO75417 2590 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 HMCN2Q8NDA2 5059 aa0.33□□□□□ -2.36
CLK1-209ENST00000472679 RNF213Q63HN8 5207 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 LAMA2P24043 3122 aaKnown RBP0.32□□□□□ -2.36
CLK1-209ENST00000472679 TEX15Q9BXT5 2789 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 PKD1L1Q8TDX9 2849 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 BANF1O75531 89 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 CRHP06850 196 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 NFYBP25208 207 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 OR52A1Q9UKL2 312 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 ARL2BPQ9Y2Y0 163 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 CSMD1Q96PZ7 3565 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 ITPR1Q14643 2758 aa0.32□□□□□ -2.36
CLK1-209ENST00000472679 VCANP13611 3396 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 TENM2Q9NT68 2774 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 TRAV23DV6A0A075B6W5 121 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 IFNA6P05013 189 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 SPATA45Q537H7 98 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 ARPINQ7Z6K5 226 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 CHCHD1Q96BP2 118 aaKnown RBP0.31□□□□□ -2.36
CLK1-209ENST00000472679 ARMC1Q9NVT9 282 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 PLAC8Q9NZF1 115 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 ARL5AQ9Y689 179 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 ACACBO00763 2458 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 MAP1BP46821 2468 aaKnown RBP0.31□□□□□ -2.36
CLK1-209ENST00000472679 MYO9AB2RTY4 2548 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 UTP20O75691 2785 aaKnown RBP0.31□□□□□ -2.36
CLK1-209ENST00000472679 ZGRF1Q86YA3 2104 aa0.31□□□□□ -2.36
CLK1-209ENST00000472679 COL24A1Q17RW2 1714 aa0.3□□□□□ -2.36
CLK1-209ENST00000472679 FAT3Q8TDW7 4589 aa0.3□□□□□ -2.36
CLK1-209ENST00000472679 NUPR2A6NF83 97 aa0.3□□□□□ -2.36
CLK1-209ENST00000472679 RAB5CP51148 216 aa0.3□□□□□ -2.36
CLK1-209ENST00000472679 INSL3P51460 131 aa0.3□□□□□ -2.36
CLK1-209ENST00000472679 FOXA3P55318 350 aaPredicted RBP0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms