RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DSCR8Q96T75 97 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 C8orf17Q9NRJ1 99 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 PLIN4Q96Q06 1357 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 ABCC5O15440 1437 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 DLC1Q96QB1 1528 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 SPHKAPQ2M3C7 1700 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 ADAMTS9Q9P2N4 1935 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 AGRNO00468 2067 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 TRIP11Q15643 1979 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 NCKAP5O14513 1909 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 RALGAPA2Q2PPJ7 1873 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 ABCA3Q99758 1704 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 NLRP1Q9C000 1473 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 COL1A2P08123 1366 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 IGLV1-50A0A075B6I6 118 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 A0A087WXM4 84 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 H3BRM9 83 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 YPEL1O60688 119 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 TCL1BO95988 128 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 IGLC2P0DOY2 106 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 IGLC3P0DOY3 106 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 CCL4P13236 92 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 UBE2AP49459 152 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 HINT1P49773 126 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 LSM3P62310 102 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 HIST1H4AP62805 103 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 KISS1Q15726 138 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 PATE2Q6UY27 113 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 DPPA3Q6W0C5 159 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 SBSPONQ8IVN8 264 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 LINC00612Q8N6U2 182 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 VSTM2AQ8TAG5 236 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 FGF13Q92913 245 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 C20orf78Q9BR46 151 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 DPH3P1Q9H4G8 78 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 ST20Q9HBF5 79 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 XAGE1AQ9HD64 81 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 DEC1Q9P2X7 70 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 HHLA3Q9XRX5 114 aa3.31□□□□□ -1.88
CCDC88A-210ENST00000468534 IGHV7-4-1A0A0J9YVY3 117 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 KLF18A0A0U1RQI7 1052 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 A8MWL6 223 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 GNGT2O14610 69 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 HYPMO75409 117 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 PROSCO94903 275 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 CGB3P0DN86 165 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 CGB7P0DN87 165 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 CD28P10747 220 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 NPPCP23582 126 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 POLR2JP52435 117 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 CMC4P56277 68 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 TSPEAR-AS2P59090 65 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 BLCAPP62952 87 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 ADIRFQ15847 76 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 RNASE13Q5GAN3 156 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 NOXRED1Q6NXP6 359 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 MIR17HGQ75NE6 70 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 CAMK2N1Q7Z7J9 78 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 OR5AS1Q8N127 324 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 ZFAND2AQ8N6M9 145 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 Q8NBF4 154 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 IMMP2LQ96T52 175 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 PLA2G12AQ9BZM1 189 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 RABAC1Q9UI14 185 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 PHLDA3Q9Y5J5 127 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 DENND4CQ5VZ89 1909 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 ZSWIM8A7E2V4 1837 aa3.3□□□□□ -1.88
CCDC88A-210ENST00000468534 SCAF11Q99590 1463 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 DOCK4Q8N1I0 1966 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 MIA3Q5JRA6 1907 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 ANKRD31Q8N7Z5 1873 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 IGLV3-9A0A075B6K5 115 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 IGHV3-66A0A0C4DH42 116 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 ZNF705FA8MVS1 300 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 C3orf84H3BNL1 204 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 SERF1AO75920 110 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 ZNF705BP0CI00 300 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 COL8A2P25067 703 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 RPL27AP46776 148 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 KRTAP10-8P60410 259 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 PCBD1P61457 104 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 SEC11AP67812 179 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 SS18Q15532 418 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 MRPL51Q4U2R6 128 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 IGFL3Q6UXB1 125 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 SOSTDC1Q6X4U4 206 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 C11orf1Q9H5F2 150 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 CACFD1Q9UGQ2 172 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 MED1Q15648 1581 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 FANCMQ8IYD8 2048 aa3.29□□□□□ -1.88
CCDC88A-210ENST00000468534 NCOA2Q15596 1464 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 RIC1Q4ADV7 1423 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 KIF20BQ96Q89 1820 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 TRAV1-1A0A0B4J248 108 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 TRBV7-7A0A0K0K1E9 115 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 ZNF736B4DX44 427 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 IGHV3-30-3P0DP02 117 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 CCL3P10147 92 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 CCL5P13501 91 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 ADCYAP1P18509 176 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms