RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 C8orf31Q8N9H6 132 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 SMRP1Q8NCR6 262 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 HERVK_113P63121 156 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 HELZP42694 1942 aaKnown RBP5.92□□□□□ -1.46
VPS53-204ENST00000437048 MRPL53Q96EL3 112 aaKnown RBP5.92□□□□□ -1.46
VPS53-204ENST00000437048 KLK10O43240 276 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 SAA2P0DJI9 122 aaPredicted RBP5.92□□□□□ -1.46
VPS53-204ENST00000437048 CCL2P13500 99 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 TBX6O95947 436 aaPredicted RBP5.92□□□□□ -1.46
VPS53-204ENST00000437048 PLXND1Q9Y4D7 1925 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 E9PQ18 207 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 CD7P09564 240 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 ZFP36L1Q07352 338 aaKnown RBP5.92□□□□□ -1.46
VPS53-204ENST00000437048 Q6ZS92 163 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 CEND1Q8N111 149 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 LIME1Q9H400 295 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 A0A087WX48 190 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 TRIP6Q15654 476 aaKnown RBP5.92□□□□□ -1.46
VPS53-204ENST00000437048 PIFOQ8TCI5 191 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 INSP01308 110 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 C5orf47Q569G3 176 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 SH2D6Q7Z4S9 175 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 WBP1Q96G27 269 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 SHISA3A0PJX4 238 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 Q86TA4 180 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 MBNL3Q9NUK0 354 aaKnown RBP5.91□□□□□ -1.46
VPS53-204ENST00000437048 I3L3M4 83 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 GATA3P23771 443 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 KIF26AQ9ULI4 1882 aaPredicted RBP5.91□□□□□ -1.46
VPS53-204ENST00000437048 TRGV2A0A075B6R0 118 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 FUSP35637 526 aaKnown RBP eCLIP5.91□□□□□ -1.46
VPS53-204ENST00000437048 EGR2P11161 476 aaPredicted RBP5.91□□□□□ -1.46
VPS53-204ENST00000437048 PRIMA1Q86XR5 153 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 SLX1AQ9BQ83 275 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 C17orf100A8MU93 164 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 ALKBH6Q3KRA9 238 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 FOXI2Q6ZQN5 318 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 CHCHD2Q9Y6H1 151 aaPredicted RBP5.91□□□□□ -1.46
VPS53-204ENST00000437048 UQCRQO14949 82 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 ALPK3Q96L96 1907 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 TECTAO75443 2155 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 NTN3O00634 580 aaPredicted RBP5.91□□□□□ -1.46
VPS53-204ENST00000437048 VDAC2P45880 294 aaPredicted RBP5.91□□□□□ -1.46
VPS53-204ENST00000437048 TFPI2P48307 235 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 TSSC4Q9Y5U2 329 aaPredicted RBP5.91□□□□□ -1.46
VPS53-204ENST00000437048 CXCL5P42830 114 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 GAS1P54826 345 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 SPATA12Q7Z6I5 190 aa5.91□□□□□ -1.46
VPS53-204ENST00000437048 NOTCH2Q04721 2471 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 F6UB75 175 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 IGHG2P01859 326 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 HTN1P15515 57 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 SYNJ2BPP57105 145 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 PAX8Q06710 450 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 PMS2CLQ68D20 193 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 PLA2G3Q9NZ20 509 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 CRYBA2P53672 197 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 A0A087X0K7 114 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 CCL8P80075 99 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 MP68P56378 58 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 GFI1BQ5VTD9 330 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 C9JQL5 133 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 COX6A1P12074 109 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 QRFPP83859 136 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 ETDBQ3ZM63 59 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 SHANK2-AS3Q9BTD1 123 aa5.9□□□□□ -1.46
VPS53-204ENST00000437048 MRPS36P82909 103 aaKnown RBP5.9□□□□□ -1.47
VPS53-204ENST00000437048 ZNF474Q6S9Z5 364 aaPredicted RBP5.9□□□□□ -1.47
VPS53-204ENST00000437048 RMI2Q96E14 147 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 PATE4P0C8F1 98 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 TRAV12-1A0A0B4J245 112 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 NDUFB1O75438 58 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 LINC00158P58513 81 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 C6orf226Q5I0X4 101 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 TCF20Q9UGU0 1960 aaKnown RBP5.9□□□□□ -1.47
VPS53-204ENST00000437048 GPHA2Q96T91 129 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 PRSS22Q9GZN4 317 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 FNDC1Q4ZHG4 1894 aaPredicted RBP5.9□□□□□ -1.47
VPS53-204ENST00000437048 CRYGSP22914 178 aa5.9□□□□□ -1.47
VPS53-204ENST00000437048 TAX1BP3O14907 124 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 MRAPQ8TCY5 172 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 TMEM158Q8WZ71 300 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 ST6GALNAC6Q969X2 333 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 LILRA1O75019 489 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 PRTN3P24158 256 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 PAQR4Q8N4S7 273 aaPredicted RBP5.89□□□□□ -1.47
VPS53-204ENST00000437048 C9orf172C9J069 976 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 TMEM256Q8N2U0 113 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 DSCAML1Q8TD84 2053 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 TNS1Q9HBL0 1735 aaKnown RBP5.89□□□□□ -1.47
VPS53-204ENST00000437048 C16orf47Q6ZP98 133 aaPredicted RBP5.89□□□□□ -1.47
VPS53-204ENST00000437048 CELA2BP08218 269 aaPredicted RBP5.89□□□□□ -1.47
VPS53-204ENST00000437048 TMEM14BQ9NUH8 114 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 EREGO14944 169 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 RBM3P98179 157 aaKnown RBP5.89□□□□□ -1.47
VPS53-204ENST00000437048 PCOLCEQ15113 449 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 F8P00451 2351 aa5.89□□□□□ -1.47
VPS53-204ENST00000437048 A0A0B4J2C4 111 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 IL9P15248 144 aa5.88□□□□□ -1.47
VPS53-204ENST00000437048 CRYBA4P53673 196 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms