RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 RPS4Y1P22090 263 aaKnown RBP1.91□□□□□ -2.1
USP40-204ENST00000427947 RPL28P46779 137 aaKnown RBP1.91□□□□□ -2.1
USP40-204ENST00000427947 ZNF80P51504 273 aaPredicted RBP1.91□□□□□ -2.1
USP40-204ENST00000427947 CDC42P60953 191 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 SCGB2B2Q4G0G5 96 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 Q6ZS52 159 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 LCA10Q71F78 164 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 SLC35E3Q7Z769 313 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 TRAPPC6BQ86SZ2 158 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 LHFPL1Q86WI0 220 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 SKA2Q8WVK7 121 aaPredicted RBP1.91□□□□□ -2.1
USP40-204ENST00000427947 RMND5BQ96G75 393 aaPredicted RBP1.91□□□□□ -2.1
USP40-204ENST00000427947 IMUPQ9GZP8 106 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 CKLFQ9UBR5 152 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 HSPB11Q9Y547 144 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 NUP205Q92621 2012 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 OTOFQ9HC10 1997 aa1.9□□□□□ -2.1
USP40-204ENST00000427947 DOCK5Q9H7D0 1870 aa1.9□□□□□ -2.1
USP40-204ENST00000427947 ADGRL2O95490 1459 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 NKTRP30414 1462 aaKnown RBP1.9□□□□□ -2.11
USP40-204ENST00000427947 IGHV3-15A0A0B4J1V0 119 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 DUXBA0A1W2PPF3 345 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 E7EQ34 232 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 GNRH2O43555 120 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 ORC5O43913 435 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 PIAS1O75925 651 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 C1QAP02745 245 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 CSN2P05814 226 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 UCHL1P09936 223 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 ZNF728P0DKX0 622 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 ALDH3A1P30838 453 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 SRP14P37108 136 aaKnown RBP1.9□□□□□ -2.11
USP40-204ENST00000427947 HINT1P49773 126 aaPredicted RBP1.9□□□□□ -2.11
USP40-204ENST00000427947 EIF5AP63241 154 aaKnown RBP1.9□□□□□ -2.11
USP40-204ENST00000427947 SURF2Q15527 256 aaPredicted RBP1.9□□□□□ -2.11
USP40-204ENST00000427947 KISS1Q15726 138 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 TMEM128Q5BJH2 165 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 TMEM78Q5T7P6 136 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 IFT20Q8IY31 132 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 C12orf29Q8N999 325 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 ST6GALNAC3Q8NDV1 305 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 OR8D4Q8NGM9 314 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 CMTM2Q8TAZ6 248 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 LZICQ8WZA0 190 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 SCGB3A1Q96QR1 104 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 EFCAB11Q9BUY7 163 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 CCDC32Q9BV29 185 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 OSTCQ9NRP0 149 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 GINS2Q9Y248 185 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.9□□□□□ -2.11
USP40-204ENST00000427947 PTPN23Q9H3S7 1636 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 NLRC5Q86WI3 1866 aa1.9□□□□□ -2.11
USP40-204ENST00000427947 DSCAML1Q8TD84 2053 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 TONSLQ96HA7 1378 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 EIF2AK4Q9P2K8 1649 aaKnown RBP1.89□□□□□ -2.11
USP40-204ENST00000427947 NRXN3Q9Y4C0 1643 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 TRGV5A0A0B4J1U4 118 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 A0A1W2PRE2 83 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 ZNF860A6NHJ4 632 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 CTSGP08311 255 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 NBEAP1P0C6P0 100 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 CCL5P13501 91 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 LGALS3P17931 250 aaKnown RBP1.89□□□□□ -2.11
USP40-204ENST00000427947 CD24P25063 80 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 NFYBP25208 207 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 PSMB8P28062 276 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 YPEL3P61236 119 aaPredicted RBP1.89□□□□□ -2.11
USP40-204ENST00000427947 LTC4SQ16873 150 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 BCL2L15Q5TBC7 163 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 KRTAP5-10Q6L8G5 202 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 MIR17HGQ75NE6 70 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 KTN1-AS1Q86SY8 53 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 PHF13Q86YI8 300 aaPredicted RBP1.89□□□□□ -2.11
USP40-204ENST00000427947 HIST3H2BBQ8N257 126 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 OR10J5Q8NHC4 309 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 OR2J1Q9GZK6 312 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 PBOV1Q9GZY1 135 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 ASXL1Q8IXJ9 1541 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 HFM1A2PYH4 1435 aa1.89□□□□□ -2.11
USP40-204ENST00000427947 MYOM2P54296 1465 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 RALGAPA2Q2PPJ7 1873 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 TRPM2O94759 1503 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 A0A087X0T9 212 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 RFPL4AA6NLU0 287 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 RFPL4AL1F8VTS6 287 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 G3V3Q6 166 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 TAX1BP3O14907 124 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 MSMBP08118 114 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 OGNP20774 298 aaKnown RBP1.88□□□□□ -2.11
USP40-204ENST00000427947 EVX1P49640 407 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 SUPT4H1P63272 117 aaKnown RBP1.88□□□□□ -2.11
USP40-204ENST00000427947 RELAQ04206 551 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 SMCO1Q147U7 214 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 RRN3P1Q2M238 152 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 LINC01554Q52M75 96 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 KHDC3LQ587J8 217 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 AGTRAPQ6RW13 159 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 TMEM35BQ8NCS4 154 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 OR5J2Q8NH18 312 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 TERB2Q8NHR7 220 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms