RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 VBP1P61758 197 aa11.4□□□□□ -0.58
CHCHD3-202ENST00000423635 Q6ZSN1 163 aa11.4□□□□□ -0.58
CHCHD3-202ENST00000423635 SHANK2-AS3Q9BTD1 123 aa11.4□□□□□ -0.58
CHCHD3-202ENST00000423635 SNURFLB1AK76 121 aa11.39□□□□□ -0.59
CHCHD3-202ENST00000423635 DNAH10OSP0CZ25 163 aa11.39□□□□□ -0.59
CHCHD3-202ENST00000423635 DAZ2Q13117 558 aaKnown RBP11.39□□□□□ -0.59
CHCHD3-202ENST00000423635 KIR3DS1Q14943 382 aa11.39□□□□□ -0.59
CHCHD3-202ENST00000423635 RPUSD4Q96CM3 377 aaKnown RBP11.39□□□□□ -0.59
CHCHD3-202ENST00000423635 TMPRSS5Q9H3S3 457 aa11.39□□□□□ -0.59
CHCHD3-202ENST00000423635 DNAH8Q96JB1 4490 aa11.39□□□□□ -0.59
CHCHD3-202ENST00000423635 AP3S1Q92572 193 aa11.38□□□□□ -0.59
CHCHD3-202ENST00000423635 PRRT1Q99946 306 aa11.38□□□□□ -0.59
CHCHD3-202ENST00000423635 FUNDC2Q9BWH2 189 aa11.38□□□□□ -0.59
CHCHD3-202ENST00000423635 NXPH4O95158 308 aa11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 AKAIN1P0CW23 69 aa11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 IAPPP10997 89 aa11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 PLP1P60201 277 aa11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 RPP30P78346 268 aaKnown RBP11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 MRPS10P82664 201 aaKnown RBP11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 TMED4Q7Z7H5 227 aa11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 OR51S1Q8NGJ8 323 aa11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 PAIP2BQ9ULR5 123 aaKnown RBP11.37□□□□□ -0.59
CHCHD3-202ENST00000423635 RAP2BP61225 183 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 SRPXP78539 464 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 GFI1BQ5VTD9 330 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 Q6ZTI0 123 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 ACOT7LQ6ZUV0 252 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 LRRC20Q8TCA0 184 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 SCGB3A2Q96PL1 93 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 VCX3AQ9NNX9 186 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 HIGD1AQ9Y241 93 aa11.36□□□□□ -0.59
CHCHD3-202ENST00000423635 A0A087WXM4 84 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 PIGBOS1A0A0B4J2F0 54 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 KRTAP29-1A8MX34 341 aaPredicted RBP11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 MRPS12O15235 138 aaKnown RBP11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 HYPMO75409 117 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 MED6O75586 246 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 ATP6V1G2O95670 118 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 PRB4P10163 310 aaPredicted RBP11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 SLC25A6P12236 298 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 CIB3Q96Q77 187 aaPredicted RBP11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 TMEM70Q9BUB7 260 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 TRAV9-2A0A087WT02 112 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 DUXBA0A1W2PPF3 345 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 IL5P05113 134 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 ANXA3P12429 323 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 CXCL2P19875 107 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 CYP2G1PQ6ZSU1 146 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 SMIM4Q8WVI0 70 aa11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 PARD6GQ9BYG4 376 aaPredicted RBP11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 ZNF331Q9NQX6 463 aaPredicted RBP11.35□□□□□ -0.59
CHCHD3-202ENST00000423635 K7EP13 123 aa11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 ZNF324O75467 553 aaPredicted RBP11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 AKR1C1Q04828 323 aa11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 C4orf46Q504U0 113 aa11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 LYPD5Q6UWN5 251 aa11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 CLVS1Q8IUQ0 354 aaPredicted RBP11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 PYGO2Q9BRQ0 406 aa11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 SCP2D1Q9UJQ7 156 aa11.34□□□□□ -0.59
CHCHD3-202ENST00000423635 TRGV2A0A075B6R0 118 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 SYNGR2O43760 224 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 HAMPP81172 84 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 SERTAD4-AS1Q5TG53 156 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 S100A7AQ86SG5 101 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 MIXL1Q9H2W2 232 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 RNF24Q9Y225 148 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 ICOSQ9Y6W8 199 aa11.33□□□□□ -0.6
CHCHD3-202ENST00000423635 PMS2P5A8MQ11 134 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 WRBO00258 174 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 CTDSPLO15194 276 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 OR5G3P0C626 314 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 LINC00869P0C866 280 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 SELENOTP62341 195 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 LCN15Q6UWW0 184 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 PATE2Q6UY27 113 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 CCDC190Q86UF4 302 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 LRTM2Q8N967 370 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 ZNF431Q8TF32 576 aaPredicted RBP11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 SLC50A1Q9BRV3 221 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 MSRB1Q9NZV6 116 aa11.32□□□□□ -0.6
CHCHD3-202ENST00000423635 TRAV12-3A0A0B4J271 114 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 PRAC2D3DTV9 90 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 PAX4O43316 350 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 ANXA7P20073 488 aaKnown RBP11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 SPANXN5Q5MJ07 72 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 ZBTB8BQ8NAP8 495 aaPredicted RBP11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 C11orf72Q8NBR9 251 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 ODF3Q96PU9 254 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 FUT9Q9Y231 359 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 LY96Q9Y6Y9 160 aa11.31□□□□□ -0.6
CHCHD3-202ENST00000423635 ANKRD20A5PA0PJZ0 165 aa11.3□□□□□ -0.6
CHCHD3-202ENST00000423635 CT45A10P0DMU9 189 aa11.3□□□□□ -0.6
CHCHD3-202ENST00000423635 LINC00467Q9BRT7 94 aa11.3□□□□□ -0.6
CHCHD3-202ENST00000423635 GSN-AS1Q9NRJ2 163 aa11.3□□□□□ -0.6
CHCHD3-202ENST00000423635 STRAPQ9Y3F4 350 aaKnown RBP11.3□□□□□ -0.6
CHCHD3-202ENST00000423635 SPINK4O60575 86 aa11.29□□□□□ -0.6
CHCHD3-202ENST00000423635 LEPP41159 167 aa11.29□□□□□ -0.6
CHCHD3-202ENST00000423635 CTF1Q16619 201 aa11.29□□□□□ -0.6
CHCHD3-202ENST00000423635 ZNF680Q8NEM1 530 aa11.29□□□□□ -0.6
CHCHD3-202ENST00000423635 NTN5Q8WTR8 489 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms