RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 LYZP61626 148 aa8.46□□□□□ -1.05
USP54-204ENST00000422491 LYZL1Q6UWQ5 148 aa8.46□□□□□ -1.05
USP54-204ENST00000422491 FER1L6-AS2Q96M78 137 aa8.46□□□□□ -1.05
USP54-204ENST00000422491 CHAC1Q9BUX1 264 aa8.46□□□□□ -1.05
USP54-204ENST00000422491 HHLA3Q9XRX5 114 aa8.46□□□□□ -1.05
USP54-204ENST00000422491 INTS1Q8N201 2190 aaKnown RBP8.46□□□□□ -1.05
USP54-204ENST00000422491 SVILO95425 2214 aa8.46□□□□□ -1.05
USP54-204ENST00000422491 TRBV19A0A075B6N1 114 aa8.46□□□□□ -1.06
USP54-204ENST00000422491 VMA21Q3ZAQ7 101 aa8.46□□□□□ -1.06
USP54-204ENST00000422491 SIGLEC15Q6ZMC9 328 aa8.46□□□□□ -1.06
USP54-204ENST00000422491 C17orf77Q96MU5 243 aa8.46□□□□□ -1.06
USP54-204ENST00000422491 TTTY13Q9BZ97 58 aa8.46□□□□□ -1.06
USP54-204ENST00000422491 ZMAT4Q9H898 229 aa8.46□□□□□ -1.06
USP54-204ENST00000422491 C19orf67A6NJJ6 358 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 E9PLD3 99 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 F8W1H4 67 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 NPYP01303 97 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 PRB4P10163 310 aaPredicted RBP8.45□□□□□ -1.06
USP54-204ENST00000422491 TNFAIP6P98066 277 aaPredicted RBP8.45□□□□□ -1.06
USP54-204ENST00000422491 WFDC2Q14508 124 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 TMEM164Q5U3C3 297 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 TEX36Q5VZQ5 186 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 CCDC144NLQ6NUI1 221 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 TMEM190Q8WZ59 177 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 TM2D2Q9BX73 214 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 FBLL1A6NHQ2 334 aaKnown RBP8.45□□□□□ -1.06
USP54-204ENST00000422491 SHISA9B4DS77 424 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 FCN3O75636 299 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 IGHV1-46P01743 117 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 APELAP0DMC3 54 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 ATP1A1-AS1Q5TC04 95 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 ZNF562Q6V9R5 426 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 S100A7AQ86SG5 101 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 WFDC3Q8IUB2 231 aa8.45□□□□□ -1.06
USP54-204ENST00000422491 PRR33A8MZF0 331 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 M0R1B8 84 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 ZNF207O43670 478 aaKnown RBP8.44□□□□□ -1.06
USP54-204ENST00000422491 ODF1Q14990 250 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 PSMG4Q5JS54 123 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 C8orf49Q96NF6 230 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 NGBQ9NPG2 151 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 TRBV25-1A0A075B6N4 114 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 A0A1W2PRD5 423 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 A0A1W2PRF3 423 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 A0A1W2PRM7 423 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 VSTM5A8MXK1 200 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 SMKR1H3BMG3 65 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 THBDP07204 575 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 TMEM133Q9H2Q1 129 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 NHP2Q9NX24 153 aaKnown RBP8.44□□□□□ -1.06
USP54-204ENST00000422491 TMEM238LA0A1B0GVL6 79 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 K7EQM0 130 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 RPL27AP46776 148 aaKnown RBP8.44□□□□□ -1.06
USP54-204ENST00000422491 TMEM200BQ69YZ2 307 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 CEND1Q8N111 149 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 LINC00311Q8N616 119 aa8.44□□□□□ -1.06
USP54-204ENST00000422491 SPAG8Q99932 426 aaPredicted RBP8.44□□□□□ -1.06
USP54-204ENST00000422491 ICE1Q9Y2F5 2266 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 LINC01546A6NGU7 62 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 C16orf97H3BN30 126 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 J3QR89 54 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 LYPD1Q8N2G4 141 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 PROCRQ9UNN8 238 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 TMSB15BA0A087X1C1 80 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 IGLL5B9A064 214 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 CKS2P33552 79 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 CCL11P51671 97 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 SHANK2-AS3Q9BTD1 123 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 SCNM1Q9BWG6 230 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 ABCA1O95477 2261 aa8.43□□□□□ -1.06
USP54-204ENST00000422491 H3BRN7 92 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 K7EM74 188 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 M0R3E3 92 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 EVI2AP22794 236 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 SH2D6Q7Z4S9 175 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 C8orf31Q8N9H6 132 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 CFAP47Q6ZTR5 3102 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.42□□□□□ -1.06
USP54-204ENST00000422491 K7EMI3 77 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 MRPS12O15235 138 aaKnown RBP8.42□□□□□ -1.06
USP54-204ENST00000422491 SH2D1AO60880 128 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 IGKV1-17P01599 117 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 CRYGBP07316 175 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 MC5RP33032 325 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 RAB9AP51151 201 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 SRSF1Q07955 248 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP54-204ENST00000422491 ARPC1AQ92747 370 aa8.42□□□□□ -1.06
USP54-204ENST00000422491 IGHV3-72A0A0B4J1Y9 119 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 SPAARA0A1B0GVQ0 90 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 TEX22C9J3V5 150 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 H3BMG7 143 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 ETDBQ3ZM63 59 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 TMEM108Q6UXF1 575 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 WFDC12Q8WWY7 111 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 RASL11BQ9BPW5 248 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 COLQQ9Y215 455 aaPredicted RBP8.41□□□□□ -1.06
USP54-204ENST00000422491 LOC400499M0QZD8 3231 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 I3L2K1 104 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 IGKCP01834 107 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 HLA-DRB4P13762 266 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms