RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 OR10C1Q96KK4 312 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 RAB40CQ96S21 281 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 RNF126Q9BV68 326 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 CACFD1Q9UGQ2 172 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 DUXBA0A1W2PPF3 345 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 UPK2O00526 184 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 S1PR2O95136 353 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 OR5AC1P0C628 307 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 KIAA0141Q14154 515 aaPredicted RBP4.75□□□□□ -1.65
USP40-202ENST00000409945 C15orf32Q32M92 178 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 BAP18Q8IXM2 172 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 OR5B3Q8NH48 314 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 OR1S1Q8NH92 325 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 LSM10Q969L4 123 aaKnown RBP4.75□□□□□ -1.65
USP40-202ENST00000409945 ENY2Q9NPA8 101 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 GSKIPQ9P0R6 139 aa4.75□□□□□ -1.65
USP40-202ENST00000409945 ZNF256Q9Y2P7 627 aaPredicted RBP4.75□□□□□ -1.65
USP40-202ENST00000409945 TRBV7-1A0A0A6YYK4 115 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 H0Y980 276 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 DEDDO75618 318 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 OR2J3O76001 311 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 CDS2O95674 445 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 PRB2P02812 416 aaPredicted RBP4.74□□□□□ -1.65
USP40-202ENST00000409945 CTRB1P17538 263 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 M6PRP20645 277 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 G0S2P27469 103 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 FCGR2BP31994 310 aaPredicted RBP4.74□□□□□ -1.65
USP40-202ENST00000409945 S100A10P60903 97 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 ERHP84090 104 aaKnown RBP4.74□□□□□ -1.65
USP40-202ENST00000409945 CTRB2Q6GPI1 263 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 ZNF343Q6P1L6 599 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 CD164L2Q6UWJ8 174 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 PCNPQ8WW12 178 aaKnown RBP4.74□□□□□ -1.65
USP40-202ENST00000409945 DLX4Q92988 240 aaPredicted RBP4.74□□□□□ -1.65
USP40-202ENST00000409945 RPH3ALQ9UNE2 315 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 OR51B2Q9Y5P1 312 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 TRBV9A0A0B4J1U6 114 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 C3orf85A0A1B0GTC6 90 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 FBLL1A6NHQ2 334 aaKnown RBP4.74□□□□□ -1.65
USP40-202ENST00000409945 K7EPK0 472 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 GGCTO75223 188 aaKnown RBP4.74□□□□□ -1.65
USP40-202ENST00000409945 OR13C7P0DN81 318 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 G6PCP35575 357 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 SNCAP37840 140 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 SUB1P53999 127 aaKnown RBP eCLIP4.74□□□□□ -1.65
USP40-202ENST00000409945 OR2B8PP59922 312 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 C10orf55Q5SWW7 151 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 LCN12Q6JVE5 192 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 OR9G4Q8NGQ1 327 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 TMEM222Q9H0R3 208 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 ZC4H2Q9NQZ6 224 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 OR5AC2Q9NZP5 309 aa4.74□□□□□ -1.65
USP40-202ENST00000409945 IFNA17P01571 189 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 RPL12P30050 165 aaKnown RBP4.73□□□□□ -1.65
USP40-202ENST00000409945 UQCC3Q6UW78 93 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 GTSCR1Q86UQ5 136 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 SLC35G3Q8N808 338 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 DYNLRB2Q8TF09 96 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 IL22RA2Q969J5 263 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 C11orf52Q96A22 123 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 CYTL1Q9NRR1 136 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 SMAD5-AS1Q9Y6J3 95 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 TMEM56-RWDD3S4R434 201 aa4.73□□□□□ -1.65
USP40-202ENST00000409945 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.72□□□□□ -1.65
USP40-202ENST00000409945 TEX50A0A1B0GTY4 177 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 RAB19A4D1S5 217 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 PRH1P02810 166 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 REG1AP05451 166 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 SYNJ2BPP57105 145 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 S100A12P80511 92 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 KLF5Q13887 457 aaPredicted RBP4.72□□□□□ -1.65
USP40-202ENST00000409945 SP6Q3SY56 376 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 FAM74A1Q5RGS3 127 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 GFI1BQ5VTD9 330 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 LYZL2Q7Z4W2 148 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 Q8NBF4 154 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 OR2K2Q8NGT1 345 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 VN1R17PQ8TDU5 208 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 TP53RKQ96S44 253 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 TNCP24821 2201 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 EPM2AB3EWF7 344 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 CORTO00230 105 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 PVALBP20472 110 aaPredicted RBP4.72□□□□□ -1.65
USP40-202ENST00000409945 P2RY1P47900 373 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 HSPE1P61604 102 aaKnown RBP4.72□□□□□ -1.65
USP40-202ENST00000409945 MRGPRG-AS1Q2M3A8 158 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 ZC2HC1BQ5TFG8 222 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 CLEC19AQ6UXS0 136 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 UBAC2Q8NBM4 344 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 MARC2Q969Z3 335 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 SAV1Q9H4B6 383 aaPredicted RBP4.72□□□□□ -1.65
USP40-202ENST00000409945 NDUFA4L2Q9NRX3 87 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 TMEM14BQ9NUH8 114 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 SIGLEC8Q9NYZ4 499 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 NAGKQ9UJ70 344 aa4.72□□□□□ -1.65
USP40-202ENST00000409945 LSM5Q9Y4Y9 91 aaKnown RBP4.72□□□□□ -1.65
USP40-202ENST00000409945 IGLV11-55A0A075B6I3 123 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 BORCS7-ASMTA0A0B4J1R7 106 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 TRAV3A0A0B4J244 114 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 WI2-2373I1.2A0A1W2PRP0 233 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms