RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 C19orf84I3L1E1 186 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 SPRY2O43597 315 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 ARMS2P0C7Q2 107 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 PAX1P15863 534 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 ZNF25P17030 456 aaPredicted RBP10.56□□□□□ -0.72
VPS54-203ENST00000409558 PAFAH1B2P68402 229 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 C5orf64Q2M2E5 130 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 RNF182Q8N6D2 247 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 NPIPB5A8MRT5 1133 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 STXBP6Q8NFX7 210 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 DEFB104AQ8WTQ1 72 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 CHRDL1Q9BU40 450 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 A8MWL6 223 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 FSTL3O95633 263 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 NIT1Q86X76 327 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 NRGNQ92686 78 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 ZC2HC1AQ96GY0 325 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 ZNF785A8K8V0 405 aa10.55□□□□□ -0.72
VPS54-203ENST00000409558 HINT1P49773 126 aaPredicted RBP10.55□□□□□ -0.72
VPS54-203ENST00000409558 RPL11P62913 178 aaKnown RBP10.55□□□□□ -0.72
VPS54-203ENST00000409558 M0R143 59 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 ATP5IP56385 69 aaPredicted RBP10.54□□□□□ -0.72
VPS54-203ENST00000409558 CLEC19AQ6UXS0 136 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 ZNF491Q8N8L2 437 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 C21orf62Q9NYP8 219 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 MT-ND6P03923 174 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 HBBP68871 147 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 C1orf194Q5T5A4 169 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 SMKR1H3BMG3 65 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 BEND2Q8NDZ0 799 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 CT45A10P0DMU9 189 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 MAPK1IP1LQ8NDC0 245 aa10.54□□□□□ -0.72
VPS54-203ENST00000409558 CLEC3BP05452 202 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 CRYGBP07316 175 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 ERCC8Q13216 396 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 AAMDCQ9H7C9 122 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 LY96Q9Y6Y9 160 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 Q86TA4 180 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 PSG8Q9UQ74 426 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 TMEM213A2RRL7 107 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 IGHV3-11P01762 117 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 ORM1P02763 201 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 CRYGCP07315 174 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 SAA4P35542 130 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 DEFB1P60022 68 aa10.53□□□□□ -0.72
VPS54-203ENST00000409558 RAB4AP20338 218 aa10.52□□□□□ -0.72
VPS54-203ENST00000409558 MFAP4P55083 255 aa10.52□□□□□ -0.72
VPS54-203ENST00000409558 C15orf32Q32M92 178 aa10.52□□□□□ -0.72
VPS54-203ENST00000409558 EBLN2Q6P2I7 272 aa10.52□□□□□ -0.73
VPS54-203ENST00000409558 NCR2O95944 276 aa10.52□□□□□ -0.73
VPS54-203ENST00000409558 MBD6Q96DN6 1003 aa10.52□□□□□ -0.73
VPS54-203ENST00000409558 CHODLQ9H9P2 273 aa10.52□□□□□ -0.73
VPS54-203ENST00000409558 hDV102S1A0JD36 115 aa10.52□□□□□ -0.73
VPS54-203ENST00000409558 WFDC12Q8WWY7 111 aa10.52□□□□□ -0.73
VPS54-203ENST00000409558 PRTN3P24158 256 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 RELQ04864 619 aaPredicted RBP10.51□□□□□ -0.73
VPS54-203ENST00000409558 FANCD2OSQ96PS1 177 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 ALKBH7Q9BT30 221 aaPredicted RBP10.51□□□□□ -0.73
VPS54-203ENST00000409558 C2CD3Q4AC94 2353 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 HNRNPA3P51991 378 aaKnown RBP10.51□□□□□ -0.73
VPS54-203ENST00000409558 FAM71F2Q6NXP2 309 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 TNFRSF14Q92956 283 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 IGSF10Q6WRI0 2623 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 TRBV19A0A075B6N1 114 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 CSN1S1P47710 185 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 Q0VG73 95 aa10.51□□□□□ -0.73
VPS54-203ENST00000409558 ATP6V0E1O15342 81 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 RHOGP84095 191 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 FMC1Q96HJ9 113 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 VGLL1Q99990 258 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 TRBV9A0A0B4J1U6 114 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 K7EQM0 130 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 TOMM40O96008 361 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 OR8A1Q8NGG7 326 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 PRSS3P2Q8NHM4 247 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 CFHR4Q92496 578 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 OTORQ9NRC9 128 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 SRD5A1P18405 259 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 SHANK2-AS3Q9BTD1 123 aa10.5□□□□□ -0.73
VPS54-203ENST00000409558 RBPMS2Q6ZRY4 209 aaKnown RBP10.49□□□□□ -0.73
VPS54-203ENST00000409558 FAM106CPP0CH98 169 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 FAM106AQ4KMX7 169 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 SPATA12Q7Z6I5 190 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 ABCA2Q9BZC7 2435 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 FAM181BA6NEQ2 426 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 LY6LH3BQJ8 138 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 HOXB4P17483 251 aaPredicted RBP10.49□□□□□ -0.73
VPS54-203ENST00000409558 MTORP42345 2549 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 TRAV40A0A0B4J280 105 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 LTAP01374 205 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 MYCNOSP40205 109 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 AMN1Q8IY45 258 aa10.49□□□□□ -0.73
VPS54-203ENST00000409558 TRAV9-1A0A075B6T8 112 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.48□□□□□ -0.73
VPS54-203ENST00000409558 LEPROTL1O95214 131 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 APOHP02749 345 aaPredicted RBP10.48□□□□□ -0.73
VPS54-203ENST00000409558 TWIST1Q15672 202 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 OR10J3Q5JRS4 329 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 SIGLEC15Q6ZMC9 328 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 Q6ZQT7 251 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms