RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 UBE2E1P51965 193 aa14.68□□□□□ -0.06
COL18A1-204ENST00000400337 FAM215AQ9Y5M1 114 aa14.68□□□□□ -0.06
COL18A1-204ENST00000400337 RNF223E7ERA6 249 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 PAX9P55771 341 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 ZNF876PQ49A33 203 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 ORAOV1Q8WV07 137 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 NDUFA4L2Q9NRX3 87 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 PLXNA2O75051 1894 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 TRAV2A0A0B4J234 112 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 ATP6V0E1O15342 81 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 MSMBP08118 114 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 C9JQL5 133 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 IGKV1-39P01597 117 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 IGLV1-44P01699 117 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 IGKV1D-39P04432 117 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 LOXP28300 417 aaPredicted RBP14.67□□□□□ -0.06
COL18A1-204ENST00000400337 MAPK1IP1LQ8NDC0 245 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 C10orf126Q8N4M7 172 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 A0A0U1RRA0 63 aa14.67□□□□□ -0.06
COL18A1-204ENST00000400337 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.67□□□□□ -0.06
COL18A1-204ENST00000400337 NDUFS8O00217 210 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 ERCC8Q13216 396 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 SP5Q6BEB4 398 aaPredicted RBP14.66□□□□□ -0.06
COL18A1-204ENST00000400337 Q86TA4 180 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 LINC00469Q8N7U9 141 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 ZNF833PQ6ZTB9 187 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 C14orf178Q8N769 122 aaPredicted RBP14.66□□□□□ -0.06
COL18A1-204ENST00000400337 DOCK9Q9BZ29 2069 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 RBMY1BA6NDE4 496 aaKnown RBP14.66□□□□□ -0.06
COL18A1-204ENST00000400337 RBMY1EA6NEQ0 496 aaKnown RBP14.66□□□□□ -0.06
COL18A1-204ENST00000400337 RBMY1DP0C7P1 496 aaKnown RBP14.66□□□□□ -0.06
COL18A1-204ENST00000400337 RBMY1A1P0DJD3 496 aaKnown RBP14.66□□□□□ -0.06
COL18A1-204ENST00000400337 RBMY1CP0DJD4 496 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 DAZ1Q9NQZ3 744 aaKnown RBP14.66□□□□□ -0.06
COL18A1-204ENST00000400337 TRGV1A0A0A0MS02 117 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 ADARB2-AS1A8MUL3 147 aa14.66□□□□□ -0.06
COL18A1-204ENST00000400337 MED13LQ71F56 2210 aa14.65□□□□□ -0.06
COL18A1-204ENST00000400337 CMC4P56277 68 aaPredicted RBP14.65□□□□□ -0.06
COL18A1-204ENST00000400337 SYNJ2BPP57105 145 aa14.65□□□□□ -0.06
COL18A1-204ENST00000400337 DPH3P1Q9H4G8 78 aa14.65□□□□□ -0.06
COL18A1-204ENST00000400337 HOXA3O43365 443 aaPredicted RBP14.65□□□□□ -0.06
COL18A1-204ENST00000400337 NDUFB8O95169 186 aa14.65□□□□□ -0.06
COL18A1-204ENST00000400337 RPL35AP18077 110 aaKnown RBP14.65□□□□□ -0.06
COL18A1-204ENST00000400337 TANC1Q9C0D5 1861 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 A6NNC1 897 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 SSC4DQ8WTU2 575 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 NCOR1P1Q9H4R4 102 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 ZFHX2Q9C0A1 2572 aaPredicted RBP14.64□□□□□ -0.07
COL18A1-204ENST00000400337 IGHV3-53P01767 116 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 IGHV4-39P01824 125 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 MTURNQ8N3F0 131 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 MS4A6AQ9H2W1 248 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 SMPXQ9UHP9 88 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 TTC28Q96AY4 2481 aa14.64□□□□□ -0.07
COL18A1-204ENST00000400337 IGLV3-9A0A075B6K5 115 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 AMN1Q8IY45 258 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 G3V318 75 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 MMP23AO75900 390 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 ZNF415Q09FC8 603 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 SMKR1H3BMG3 65 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 TEX36Q5VZQ5 186 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 PIP4P1Q86T03 277 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 FAM110DQ8TAY7 271 aaPredicted RBP14.63□□□□□ -0.07
COL18A1-204ENST00000400337 UBE2E2Q96LR5 201 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 C15orf65H3BRN8 121 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 PDE6HQ13956 83 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 SLC25A2Q9BXI2 301 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 PLNP26678 52 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 ZNF134P52741 427 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 RIPPLY3P57055 190 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 HSD52Q0P140 79 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 MEGF9Q9H1U4 602 aa14.63□□□□□ -0.07
COL18A1-204ENST00000400337 LINC01549A6NIU2 74 aa14.62□□□□□ -0.07
COL18A1-204ENST00000400337 IGHV1-69DA0A0B4J2H0 117 aa14.62□□□□□ -0.07
COL18A1-204ENST00000400337 IGLV3-1P01715 115 aa14.62□□□□□ -0.07
COL18A1-204ENST00000400337 IGHV1-69P01742 117 aa14.62□□□□□ -0.07
COL18A1-204ENST00000400337 OR5A1Q8NGJ0 315 aa14.62□□□□□ -0.07
COL18A1-204ENST00000400337 PAX2Q02962 417 aa14.62□□□□□ -0.07
COL18A1-204ENST00000400337 PRADC1Q9BSG0 188 aa14.62□□□□□ -0.07
COL18A1-204ENST00000400337 KIAA1671Q9BY89 1806 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 C3orf79P0CE67 100 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 C1orf194Q5T5A4 169 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 J3QKU1 62 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 OR9G4Q8NGQ1 327 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 IGHV2-70DA0A0C4DH43 119 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 CRPP02741 224 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 TRAV8-2A0A0B4J237 113 aa14.61□□□□□ -0.07
COL18A1-204ENST00000400337 RPL36AP83881 106 aaKnown RBP14.61□□□□□ -0.07
COL18A1-204ENST00000400337 RPL36ALQ969Q0 106 aaKnown RBP14.61□□□□□ -0.07
COL18A1-204ENST00000400337 LSM4Q9Y4Z0 139 aaKnown RBP14.61□□□□□ -0.07
COL18A1-204ENST00000400337 SEC11AP67812 179 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 PYY3Q5JQD4 70 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 TPSG1Q9NRR2 321 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 BDP1A6H8Y1 2624 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 WIPF3A6NGB9 483 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 LINC01559Q495D7 138 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 CSTL1Q9H114 145 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 A0A087WWL8 130 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 hDV102S1A0JD36 115 aa14.6□□□□□ -0.07
COL18A1-204ENST00000400337 VCYO14598 125 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms