RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 TMEM167AQ8TBQ9 72 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 ZNF815PA8K554 130 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 KLF17Q5JT82 389 aaPredicted RBP11.51□□□□□ -0.57
RTF1-201ENST00000389629 NCOR1P1Q9H4R4 102 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 C21orf62Q9NYP8 219 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 COX6CP09669 75 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 BSPH1Q075Z2 132 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 AMTNQ6UX39 209 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 TMEM133Q9H2Q1 129 aa11.51□□□□□ -0.57
RTF1-201ENST00000389629 SPINK8P0C7L1 97 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 TMEM158Q8WZ71 300 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 TMEM200BQ69YZ2 307 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 MED13Q9UHV7 2174 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 SSBP2P81877 361 aaPredicted RBP11.5□□□□□ -0.57
RTF1-201ENST00000389629 C17orf58Q2M2W7 97 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 CD300EQ496F6 205 aaPredicted RBP11.5□□□□□ -0.57
RTF1-201ENST00000389629 METTL26Q96S19 204 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 PPBPP02775 128 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 OR10J6PQ8NGY7 276 aa11.5□□□□□ -0.57
RTF1-201ENST00000389629 COLQQ9Y215 455 aaPredicted RBP11.5□□□□□ -0.57
RTF1-201ENST00000389629 TMPRSS3P57727 454 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 MORN5Q5VZ52 161 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 SRRM4A7MD48 611 aaKnown RBP11.49□□□□□ -0.57
RTF1-201ENST00000389629 RNF114Q9Y508 228 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 SH2D1AO60880 128 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 PRTN3P24158 256 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 RHOGP84095 191 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 TRGV9Q99603 122 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 TRAV40A0A0B4J280 105 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 H3BMG7 143 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 PCP2Q8IVA1 136 aa11.49□□□□□ -0.57
RTF1-201ENST00000389629 PGPEP1Q9NXJ5 209 aa11.48□□□□□ -0.57
RTF1-201ENST00000389629 TEX48A0A1B0GUV7 120 aa11.48□□□□□ -0.57
RTF1-201ENST00000389629 GAGE12HA6NDE8 117 aa11.48□□□□□ -0.57
RTF1-201ENST00000389629 GFRA4Q9GZZ7 299 aa11.48□□□□□ -0.57
RTF1-201ENST00000389629 KMT2EQ8IZD2 1858 aa11.48□□□□□ -0.57
RTF1-201ENST00000389629 A0A1W2PPI3 338 aa11.48□□□□□ -0.57
RTF1-201ENST00000389629 KLF5Q13887 457 aaPredicted RBP11.48□□□□□ -0.57
RTF1-201ENST00000389629 RAB9AP51151 201 aa11.48□□□□□ -0.57
RTF1-201ENST00000389629 A8MWV9 139 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 SRSF1Q07955 248 aaKnown RBP eCLIP11.47□□□□□ -0.57
RTF1-201ENST00000389629 SRSF6Q13247 344 aaKnown RBP11.47□□□□□ -0.57
RTF1-201ENST00000389629 KHDC1LQ5JSQ8 128 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 ZNF747Q9BV97 191 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 CHTOPQ9Y3Y2 248 aaKnown RBP11.47□□□□□ -0.57
RTF1-201ENST00000389629 ANKRD39Q53RE8 183 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 KIR2DL4Q99706 377 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 NDUFA4L2Q9NRX3 87 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 ZGRF1Q86YA3 2104 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 CCDC144NLQ6NUI1 221 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 ARPC1AQ92747 370 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 FXYD5Q96DB9 178 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 SIGLEC8Q9NYZ4 499 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 WT1-ASQ06250 92 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 GEMIN7Q9H840 131 aaKnown RBP11.47□□□□□ -0.57
RTF1-201ENST00000389629 DKK2Q9UBU2 259 aa11.47□□□□□ -0.57
RTF1-201ENST00000389629 LYNX1G3V0Z9 82 aa11.46□□□□□ -0.57
RTF1-201ENST00000389629 LYNX1P0DP58 116 aa11.46□□□□□ -0.57
RTF1-201ENST00000389629 WIPF2Q8TF74 440 aaPredicted RBP11.46□□□□□ -0.57
RTF1-201ENST00000389629 ZNF492Q9P255 531 aa11.46□□□□□ -0.57
RTF1-201ENST00000389629 IGHV4-39P01824 125 aa11.46□□□□□ -0.57
RTF1-201ENST00000389629 CD59P13987 128 aa11.46□□□□□ -0.57
RTF1-201ENST00000389629 CT83Q5H943 113 aa11.46□□□□□ -0.57
RTF1-201ENST00000389629 Q8TCH9 128 aa11.46□□□□□ -0.57
RTF1-201ENST00000389629 MALRD1Q5VYJ5 2156 aa11.46□□□□□ -0.58
RTF1-201ENST00000389629 TMEM8BA6NDV4 472 aa11.46□□□□□ -0.58
RTF1-201ENST00000389629 K7EMI3 77 aa11.46□□□□□ -0.58
RTF1-201ENST00000389629 BRWD1-AS2P59051 145 aa11.46□□□□□ -0.58
RTF1-201ENST00000389629 PVRIGQ6DKI7 326 aa11.46□□□□□ -0.58
RTF1-201ENST00000389629 C8orf49Q96NF6 230 aa11.46□□□□□ -0.58
RTF1-201ENST00000389629 IGLC1P0CG04 106 aa11.45□□□□□ -0.58
RTF1-201ENST00000389629 ATP6V0BQ99437 205 aa11.45□□□□□ -0.58
RTF1-201ENST00000389629 LAGE3Q14657 143 aa11.45□□□□□ -0.58
RTF1-201ENST00000389629 FAM104BQ5XKR9 115 aa11.45□□□□□ -0.58
RTF1-201ENST00000389629 SMPXQ9UHP9 88 aa11.45□□□□□ -0.58
RTF1-201ENST00000389629 P0C879 139 aa11.45□□□□□ -0.58
RTF1-201ENST00000389629 SCRT2Q9NQ03 307 aa11.45□□□□□ -0.58
RTF1-201ENST00000389629 PLXNB1O43157 2135 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 HAX1O00165 279 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 DAZAP2Q15038 168 aaPredicted RBP11.44□□□□□ -0.58
RTF1-201ENST00000389629 ZFAND6Q6FIF0 208 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 SH2D6Q7Z4S9 175 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 DLX4Q92988 240 aaPredicted RBP11.44□□□□□ -0.58
RTF1-201ENST00000389629 PSMB11A5LHX3 300 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 GAGE2BQ13066 116 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 GAGE2EQ4V326 116 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 DPM3Q9P2X0 92 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 GAGE2DQ9UEU5 116 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 IGKV3-20P01619 116 aa11.44□□□□□ -0.58
RTF1-201ENST00000389629 ZNF474Q6S9Z5 364 aaPredicted RBP11.44□□□□□ -0.58
RTF1-201ENST00000389629 C2orf70A6NJV1 201 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 COL8A2P25067 703 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 CTRLP40313 264 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 LGALS9BQ3B8N2 356 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 MRPL51Q4U2R6 128 aaKnown RBP11.43□□□□□ -0.58
RTF1-201ENST00000389629 LGALS9CQ6DKI2 356 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 C1orf122Q6ZSJ8 110 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.43□□□□□ -0.582e-6■■■■□ 23.1
RTF1-201ENST00000389629 TSPAN13O95857 204 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 IGHG3P01860 377 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms