RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 HLA-DRB1P01911 266 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 AMY1AP04745 511 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 SRIP30626 198 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 TAS2R45P59539 299 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 SPATA45Q537H7 98 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 MRPL54Q6P161 138 aaKnown RBP9.78□□□□□ -0.84
CIITA-202ENST00000381835 CFAP161Q6P656 301 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 C9orf139Q6ZV77 190 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 Q8N976 141 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 ZNF503Q96F45 646 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 SLC35E1Q96K37 410 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 RCHY1Q96PM5 261 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 SMR3AQ99954 134 aa9.78□□□□□ -0.84
CIITA-202ENST00000381835 GGTLC3B5MD39 225 aa9.77□□□□□ -0.85
CIITA-202ENST00000381835 ZNF48Q96MX3 618 aaPredicted RBP9.77□□□□□ -0.85
CIITA-202ENST00000381835 IGKV1OR2-108A0A075B7D4 117 aa9.77□□□□□ -0.85
CIITA-202ENST00000381835 HLA-DQA1P01909 254 aa9.77□□□□□ -0.85
CIITA-202ENST00000381835 SUB1P53999 127 aaKnown RBP eCLIP9.77□□□□□ -0.85
CIITA-202ENST00000381835 COL5A1-AS1Q5SY13 56 aa9.77□□□□□ -0.85
CIITA-202ENST00000381835 SMIM27A0A1W2PRY6 76 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 BMPR1BO00238 502 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 ZNF324O75467 553 aaPredicted RBP9.76□□□□□ -0.85
CIITA-202ENST00000381835 MLANAQ16655 118 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 TEX29Q8N6K0 151 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 C19orf24Q9BVV8 132 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 CDC42EP3Q9UKI2 254 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 HIVEP2P31629 2446 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 LINC01548A6NM66 108 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 IGLV2-8P01709 118 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 APCSP02743 223 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 CTRLP40313 264 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 TFPI2P48307 235 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 ATP5IP56385 69 aaPredicted RBP9.76□□□□□ -0.85
CIITA-202ENST00000381835 Q6YL49 198 aa9.76□□□□□ -0.85
CIITA-202ENST00000381835 SETXQ7Z333 2677 aaKnown RBP9.75□□□□□ -0.85
CIITA-202ENST00000381835 A0A1W2PRE2 83 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 ATP6V0E1O15342 81 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 C8orf88P0DMB2 117 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 MFAP2P55001 183 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 BORCS7Q96B45 105 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 IGF2BP2-AS1Q96M15 143 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 SRSF8Q9BRL6 282 aaKnown RBP9.75□□□□□ -0.85
CIITA-202ENST00000381835 WNT10AQ9GZT5 417 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 ZNF331Q9NQX6 463 aaPredicted RBP9.75□□□□□ -0.85
CIITA-202ENST00000381835 UQCR10Q9UDW1 63 aa9.75□□□□□ -0.85
CIITA-202ENST00000381835 F11RQ9Y624 299 aaKnown RBP9.75□□□□□ -0.85
CIITA-202ENST00000381835 IZUMO1RA6ND01 250 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 HOXA3O43365 443 aaPredicted RBP9.74□□□□□ -0.85
CIITA-202ENST00000381835 IGHV3-48P01763 117 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 EGR2P11161 476 aaPredicted RBP9.74□□□□□ -0.85
CIITA-202ENST00000381835 NTF3P20783 257 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 ECSCRQ19T08 205 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 ASPHD1Q5U4P2 390 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 FAM19A2Q8N3H0 131 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 NHLRC2Q8NBF2 726 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 TXN2Q99757 166 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 TMUB1Q9BVT8 246 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 CA1P00915 261 aaPredicted RBP9.74□□□□□ -0.85
CIITA-202ENST00000381835 C3orf79P0CE67 100 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 BLCAPP62952 87 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 TMEM95Q3KNT9 176 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 TSKUQ8WUA8 353 aa9.74□□□□□ -0.85
CIITA-202ENST00000381835 CUBNO60494 3623 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 UBE2L3P68036 154 aaKnown RBP9.73□□□□□ -0.85
CIITA-202ENST00000381835 CD69Q07108 199 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 UNQ5815/PRO19632Q6UWF5 114 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 Q6ZN92 141 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 NIT1Q86X76 327 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 DUX5Q96PT3 197 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 FNDC4Q9H6D8 234 aaPredicted RBP9.73□□□□□ -0.85
CIITA-202ENST00000381835 ANK3Q12955 4377 aaKnown RBP9.73□□□□□ -0.85
CIITA-202ENST00000381835 HIVEP1P15822 2718 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 IGHV3-21A0A0B4J1V1 117 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 TRAV5A0A0B4J249 113 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 HYPMO75409 117 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 HNRNPA3P51991 378 aaKnown RBP9.73□□□□□ -0.85
CIITA-202ENST00000381835 OR2T6Q8NHC8 308 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 MRPL32Q9BYC8 188 aaKnown RBP9.73□□□□□ -0.85
CIITA-202ENST00000381835 GSX1Q9H4S2 264 aaPredicted RBP9.73□□□□□ -0.85
CIITA-202ENST00000381835 LINC00527Q9UJ94 153 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 VPREB3Q9UKI3 123 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 ZFP30Q9Y2G7 519 aa9.73□□□□□ -0.85
CIITA-202ENST00000381835 G3V318 75 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 LY6G6DO95868 133 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 IGLC2P0DOY2 106 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 IGLC3P0DOY3 106 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 SLAQ13239 276 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 KLHDC1Q8N7A1 406 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 LINC00479Q96M42 142 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 SLC25A2Q9BXI2 301 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 CRYGCP07315 174 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 MORN5Q5VZ52 161 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 DMRTA1Q5VZB9 504 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 Q6ZS46 218 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 TTC9CQ8N5M4 171 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 C18orf32Q8TCD1 76 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 DNAJC4Q9NNZ3 241 aa9.72□□□□□ -0.85
CIITA-202ENST00000381835 NPIPB5A8MRT5 1133 aa9.71□□□□□ -0.85
CIITA-202ENST00000381835 CDKN1BP46527 198 aa9.71□□□□□ -0.85
CIITA-202ENST00000381835 Q71RC1 249 aaPredicted RBP9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms