RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 C17orf77Q96MU5 243 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 F6UB75 175 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 RAMP1O60894 148 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 CSRP1P21291 193 aaKnown RBP8.72□□□□□ -1.01
RTN3-206ENST00000377819 IGHV1-2P23083 117 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 NDPQ00604 133 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 TCF15Q12870 199 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 GAGE7O76087 117 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 GAGE12FP0CL80 117 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 GAGE12GP0CL81 117 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 GAGE12IP0CL82 117 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 HEPN1Q6WQI6 88 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 ANKRD29Q8N6D5 301 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 DEFB105AQ8NG35 78 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 DEPPQ9NTK1 212 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 NDUFA12Q9UI09 145 aa8.72□□□□□ -1.01
RTN3-206ENST00000377819 RFPL3SP0C7P2 107 aa8.71□□□□□ -1.01
RTN3-206ENST00000377819 IFITM1P13164 125 aa8.71□□□□□ -1.01
RTN3-206ENST00000377819 ZNF319Q9P2F9 582 aa8.71□□□□□ -1.01
RTN3-206ENST00000377819 LY6DQ14210 128 aa8.71□□□□□ -1.01
RTN3-206ENST00000377819 BRD3OSQ6XYD6 125 aa8.71□□□□□ -1.01
RTN3-206ENST00000377819 GAGE12HA6NDE8 117 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 TIMP3P35625 211 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 C9orf106Q8NAJ2 232 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 TRGV9Q99603 122 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 FAM223BA6NKX1 122 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 A8MWP6 167 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 FAM223AQ8IWN6 122 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 ZNRF2Q8NHG8 242 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 FAM110DQ8TAY7 271 aaPredicted RBP8.71□□□□□ -1.02
RTN3-206ENST00000377819 IGFBPL1Q8WX77 278 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 TMEM141Q96I45 108 aa8.71□□□□□ -1.02
RTN3-206ENST00000377819 ZFP2Q6ZN57 461 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 IGHV2-26A0A0B4J1V2 119 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 ERVH48-1M5A8F1 160 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 DLEU1O43261 78 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 PROP1O75360 226 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 PRB2P02812 416 aaPredicted RBP8.7□□□□□ -1.02
RTN3-206ENST00000377819 CFHR3Q02985 330 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 CASC2Q6XLA1 102 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 Q8TAT8 98 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 TRBV24-1A0A075B6N3 115 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 SH2D1AO60880 128 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 FGF6P10767 208 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 AZU1P20160 251 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 CFHR1Q03591 330 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 UBE2V1Q13404 147 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 CELA3AP09093 270 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 LINC01590Q5TEZ4 76 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 C2orf66Q6UXQ4 117 aa8.7□□□□□ -1.02
RTN3-206ENST00000377819 ZNF236Q9UL36 1845 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 SYS1-DBNDD2H3BUS1 97 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BKO60814 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BJP06899 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BOP23527 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BBP33778 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BDP58876 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BCP62807 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST2H2BEQ16778 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.69□□□□□ -1.02
RTN3-206ENST00000377819 C10orf55Q5SWW7 151 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BHQ93079 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BNQ99877 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BMQ99879 126 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 FREM1Q5H8C1 2179 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 hDV102S1A0JD36 115 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 I3L3M4 83 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 LINC01356Q8N9X3 169 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 TP53TG1Q9Y2A0 90 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 BUB3O43684 328 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 CD55P08174 381 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 MRPL14Q6P1L8 145 aaKnown RBP8.69□□□□□ -1.02
RTN3-206ENST00000377819 C1QL4Q86Z23 238 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 GATA3P23771 443 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 ETDBQ3ZM63 59 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 WBP1Q96G27 269 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 Q9HAA7 133 aa8.69□□□□□ -1.02
RTN3-206ENST00000377819 SMCHD1A6NHR9 2005 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 ZNF638Q14966 1978 aaKnown RBP8.68□□□□□ -1.02
RTN3-206ENST00000377819 PLXNB2O15031 1838 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 PAX9P55771 341 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 CCL18P55774 89 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 LINC01551Q86U37 167 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 MUSTN1Q8IVN3 82 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 HIST1H2BLQ99880 126 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 TDRD6O60522 2096 aaKnown RBP8.68□□□□□ -1.02
RTN3-206ENST00000377819 HLA-DRB4P13762 266 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 NREPQ16612 68 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 HLA-DRB4X5D2U9 266 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 IGHV3-16A0A0C4DH30 117 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 A0A1W2PR77 199 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 MBD3L4A6NDZ8 208 aaPredicted RBP8.68□□□□□ -1.02
RTN3-206ENST00000377819 MBD3L3A6NE82 208 aaPredicted RBP8.68□□□□□ -1.02
RTN3-206ENST00000377819 MBD3L5A6NJ08 208 aaPredicted RBP8.68□□□□□ -1.02
RTN3-206ENST00000377819 RNASE2P10153 161 aaKnown RBP8.68□□□□□ -1.02
RTN3-206ENST00000377819 TIRAPP58753 221 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 Q5BKY6 102 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 MBD3L2Q8NHZ7 208 aaPredicted RBP8.68□□□□□ -1.02
RTN3-206ENST00000377819 IGHV1-3A0A0C4DH29 117 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 M0R1W7 72 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms