RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 IGHV3-73A0A0B4J1V6 119 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 FRMD6-AS1P0C7T7 363 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 VKORC1Q9BQB6 163 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 NPFFO15130 113 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 ADIPOQQ15848 244 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 KIR2DL4Q99706 377 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 EXPH5Q8NEV8 1989 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 IGHG3P01860 377 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 ATP5J2P56134 94 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 HSD52Q0P140 79 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 FXYD5Q96DB9 178 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 FABP5P3A8MUU1 101 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 VWC2Q2TAL6 325 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 MORN5Q5VZ52 161 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 ZC2HC1AQ96GY0 325 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 PSMB11A5LHX3 300 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 CD7P09564 240 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 SRSF1Q07955 248 aaKnown RBP eCLIP5.26□□□□□ -1.573e-7■□□□□ 10.9
SMC1A-202ENST00000375340 COL6A6A6NMZ7 2263 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 CEACAM4O75871 244 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 PRSS2P07478 247 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 MS4A6AQ9H2W1 248 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 GPR179Q6PRD1 2367 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 KIAA1549Q9HCM3 1950 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 A0A1B0GWJ7 208 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 FAM106AQ4KMX7 169 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 TTC9CQ8N5M4 171 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 RNASE1P07998 156 aaKnown RBP5.26□□□□□ -1.57
SMC1A-202ENST00000375340 WT1-ASQ06250 92 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 ZNF672Q499Z4 452 aaPredicted RBP5.26□□□□□ -1.57
SMC1A-202ENST00000375340 TMEM75Q8N9X5 138 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 RNF138Q8WVD3 245 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 C17orf77Q96MU5 243 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 BDP1A6H8Y1 2624 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 MRPL52Q86TS9 123 aaKnown RBP5.26□□□□□ -1.57
SMC1A-202ENST00000375340 MBD3L4A6NDZ8 208 aaPredicted RBP5.26□□□□□ -1.57
SMC1A-202ENST00000375340 MBD3L3A6NE82 208 aaPredicted RBP5.26□□□□□ -1.57
SMC1A-202ENST00000375340 MBD3L5A6NJ08 208 aaPredicted RBP5.26□□□□□ -1.57
SMC1A-202ENST00000375340 SFTPCP11686 197 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 MBD3L2Q8NHZ7 208 aaPredicted RBP5.26□□□□□ -1.57
SMC1A-202ENST00000375340 TMEM158Q8WZ71 300 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 SHANK2-AS3Q9BTD1 123 aa5.26□□□□□ -1.57
SMC1A-202ENST00000375340 IGLC2P0DOY2 106 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 IGLC3P0DOY3 106 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 YPEL3P61236 119 aaPredicted RBP5.25□□□□□ -1.57
SMC1A-202ENST00000375340 FAM231BA6NCW3 169 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 ZNF815PA8K554 130 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 E7EQL1 145 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 IGLL1P15814 213 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 BCL6BQ8N143 479 aaPredicted RBP5.25□□□□□ -1.57
SMC1A-202ENST00000375340 K7ERJ3 54 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 HOXA3O43365 443 aaPredicted RBP5.25□□□□□ -1.57
SMC1A-202ENST00000375340 EMP1P54849 157 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 SNRPD3P62318 126 aaKnown RBP5.25□□□□□ -1.57
SMC1A-202ENST00000375340 CD300EQ496F6 205 aaPredicted RBP5.25□□□□□ -1.57
SMC1A-202ENST00000375340 SPACA3Q8IXA5 215 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 GFRA4Q9GZZ7 299 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 MRPS16Q9Y3D3 137 aaKnown RBP5.25□□□□□ -1.57
SMC1A-202ENST00000375340 FNDC10F2Z333 226 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 RAB9AP51151 201 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 C19orf67A6NJJ6 358 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 ESDP10768 282 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 KLRB1Q12918 225 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 A0A1W2PRX2 142 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 LINC00173Q6ZV60 143 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 DUX3Q96PT4 197 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 DOPEY2Q9Y3R5 2298 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 SMAGPQ0VAQ4 97 aa5.25□□□□□ -1.57
SMC1A-202ENST00000375340 SEC11AP67812 179 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 Q6ZSR3 168 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 OR5A1Q8NGJ0 315 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 IGF2BP2-AS1Q96M15 143 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 ANKHD1Q8IWZ3 2542 aaKnown RBP5.24□□□□□ -1.57
SMC1A-202ENST00000375340 HCFC1P51610 2035 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 TRAV2A0A0B4J234 112 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 MTURNQ8N3F0 131 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 RUSC1-AS1Q66K80 236 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 Q8TCH9 128 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 DNAH12Q6ZR08 3092 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 CHAC1Q9BUX1 264 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 NXT2Q9NPJ8 142 aaKnown RBP5.24□□□□□ -1.57
SMC1A-202ENST00000375340 PCNX2A6NKB5 2137 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 MRPL51Q4U2R6 128 aaKnown RBP5.24□□□□□ -1.57
SMC1A-202ENST00000375340 BRD3OSQ6XYD6 125 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 ZNF295-AS1Q8N0V1 137 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 NEU4Q8WWR8 484 aaPredicted RBP5.24□□□□□ -1.57
SMC1A-202ENST00000375340 ZNF492Q9P255 531 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 TRAV40A0A0B4J280 105 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 SMAD7O15105 426 aaKnown RBP5.24□□□□□ -1.57
SMC1A-202ENST00000375340 LTAP01374 205 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 C19orf54Q5BKX5 351 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 ZNF479Q96JC4 524 aa5.24□□□□□ -1.57
SMC1A-202ENST00000375340 GAGE12BA1L429 117 aa5.23□□□□□ -1.57
SMC1A-202ENST00000375340 TSPAN13O95857 204 aa5.23□□□□□ -1.57
SMC1A-202ENST00000375340 LY6DQ14210 128 aa5.23□□□□□ -1.57
SMC1A-202ENST00000375340 SLC50A1Q9BRV3 221 aa5.23□□□□□ -1.57
SMC1A-202ENST00000375340 PAX8Q06710 450 aa5.23□□□□□ -1.57
SMC1A-202ENST00000375340 C14orf178Q8N769 122 aaPredicted RBP5.23□□□□□ -1.57
SMC1A-202ENST00000375340 KIR2DL5BA0A0G2JN68 375 aa5.23□□□□□ -1.57
SMC1A-202ENST00000375340 KIR2DL5BA0A0G2JPC4 375 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms