RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 IGHV3-49A0A0A0MS15 119 aa9.56□□□□□ -0.88
PTPN1-201ENST00000371621 TNFRSF6BO95407 300 aa9.56□□□□□ -0.88
PTPN1-201ENST00000371621 DLX6P56179 175 aa9.56□□□□□ -0.88
PTPN1-201ENST00000371621 NPC2P61916 151 aa9.56□□□□□ -0.88
PTPN1-201ENST00000371621 MORN5Q5VZ52 161 aa9.56□□□□□ -0.88
PTPN1-201ENST00000371621 MRPL35Q9NZE8 188 aaKnown RBP9.56□□□□□ -0.88
PTPN1-201ENST00000371621 RPUSD1Q9UJJ7 312 aaKnown RBP9.56□□□□□ -0.88
PTPN1-201ENST00000371621 A0A1W2PQM1 296 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 FAM106CPP0CH98 169 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 APOBEC3AP31941 199 aaPredicted RBP9.55□□□□□ -0.88
PTPN1-201ENST00000371621 KLF5Q13887 457 aaPredicted RBP9.55□□□□□ -0.88
PTPN1-201ENST00000371621 FAM106AQ4KMX7 169 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 SPTBN5Q9NRC6 3674 aaKnown RBP9.55□□□□□ -0.88
PTPN1-201ENST00000371621 ZNF688P0C7X2 276 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 LGALS9BQ3B8N2 356 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 LGALS9CQ6DKI2 356 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 CACNG8Q8WXS5 425 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 ZNF106Q9H2Y7 1883 aaKnown RBP9.55□□□□□ -0.88
PTPN1-201ENST00000371621 TNFAIP6P98066 277 aaPredicted RBP9.55□□□□□ -0.88
PTPN1-201ENST00000371621 NFAM1Q8NET5 270 aaPredicted RBP9.55□□□□□ -0.88
PTPN1-201ENST00000371621 Q8TAT8 98 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 SPANXB1Q9NS25 103 aaPredicted RBP9.55□□□□□ -0.88
PTPN1-201ENST00000371621 ZNRD1Q9P1U0 126 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 LAMA1P25391 3075 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 NAV3Q8IVL0 2385 aa9.55□□□□□ -0.88
PTPN1-201ENST00000371621 HTN1P15515 57 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 GATA3P23771 443 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 CCL11P51671 97 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 Q6P435 159 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 C6orf15Q6UXA7 325 aaPredicted RBP9.54□□□□□ -0.88
PTPN1-201ENST00000371621 OBSL1O75147 1896 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 HCFC1P51610 2035 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 RS1O15537 224 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 NDUFS7O75251 213 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 PCOLCEQ15113 449 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 IGFL4Q6B9Z1 124 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 Q6ZUT4 128 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 NEGR1Q7Z3B1 354 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 AGRNO00468 2067 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 IGHV3-66A0A0C4DH42 116 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 IGHV5-10-1A0A0J9YXX1 117 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 IGKV1-16P04430 117 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 MEOX1P50221 254 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 LOXL1Q08397 574 aaPredicted RBP9.54□□□□□ -0.88
PTPN1-201ENST00000371621 RRN3P1Q2M238 152 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 FAM159AQ6UWV7 190 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 C15orf53Q8NAA6 179 aa9.54□□□□□ -0.88
PTPN1-201ENST00000371621 NTN5Q8WTR8 489 aaPredicted RBP9.54□□□□□ -0.88
PTPN1-201ENST00000371621 IGHV3-23P01764 117 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 TCTEX1D4Q5JR98 221 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 A0A0U1RRA0 63 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 ADIPOQQ15848 244 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 FAM120AOSQ5T036 256 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 ITLN1Q8WWA0 313 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 PROK2Q9HC23 129 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 ERG28Q9UKR5 140 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 C2CD4DB7Z1M9 353 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 UPK2O00526 184 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 PF4V1P10720 104 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 ZNF562Q6V9R5 426 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 NXT2Q9NPJ8 142 aaKnown RBP9.53□□□□□ -0.88
PTPN1-201ENST00000371621 CFAP54Q96N23 3096 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.53□□□□□ -0.88
PTPN1-201ENST00000371621 NPYP01303 97 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 PRCDQ00LT1 54 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 C2orf82Q6UX34 121 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 TIMD4Q96H15 378 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 KIR2DL4Q99706 377 aa9.53□□□□□ -0.88
PTPN1-201ENST00000371621 SORL1Q92673 2214 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 PROCRQ9UNN8 238 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 EML5Q05BV3 1969 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 NDUFB3O43676 98 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 ID1P41134 155 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 C2orf91Q6ZV80 131 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 FAM214BQ7L5A3 538 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 GTSF1Q8WW33 167 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 MRPL20Q9BYC9 149 aaKnown RBP9.52□□□□□ -0.89
PTPN1-201ENST00000371621 FOXA2Q9Y261 457 aaPredicted RBP9.52□□□□□ -0.89
PTPN1-201ENST00000371621 PLXNA2O75051 1894 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 VPS13AQ96RL7 3174 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 IGKV2-40A0A087WW87 121 aaPredicted RBP9.52□□□□□ -0.89
PTPN1-201ENST00000371621 C21orf140B9A014 251 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 IGKV2D-40P01614 121 aaPredicted RBP9.52□□□□□ -0.89
PTPN1-201ENST00000371621 EFNA4P52798 201 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 TMEM78Q5T7P6 136 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 FAM74A4Q5TZK3 123 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 Q6AWC8 147 aa9.52□□□□□ -0.89
PTPN1-201ENST00000371621 PRR19A6NJB7 356 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 CRXO43186 299 aaPredicted RBP9.51□□□□□ -0.89
PTPN1-201ENST00000371621 RPL32P62910 135 aaKnown RBP9.51□□□□□ -0.89
PTPN1-201ENST00000371621 FAM231DQ6ZW35 169 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 SLC25A45Q8N413 288 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 FREM2Q5SZK8 3169 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 GLRXP35754 106 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 CRIP3Q6Q6R5 217 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 COL4A6Q14031 1691 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 SLC25A16P16260 332 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 KLRD1Q13241 179 aa9.51□□□□□ -0.89
PTPN1-201ENST00000371621 C1orf53Q5VUE5 145 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms