RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PKD1L3Q7Z443 1732 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 M0QZK8 103 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 IGLV3-19P01714 112 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 DDTP30046 118 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 DSCR9P59020 149 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 GAGE2AQ6NT46 116 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-202ENST00000357409 AGMATQ9BSE5 352 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 TNS1Q9HBL0 1735 aaKnown RBP5.88□□□□□ -1.47
VPS13A-202ENST00000357409 SVILO95425 2214 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 GATA1P15976 413 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-202ENST00000357409 GTSF1LQ9H1H1 148 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 MYOFQ9NZM1 2061 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 TRBV7-1A0A0A6YYK4 115 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 SNHG12Q9BXW3 62 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 ANKRD31Q8N7Z5 1873 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 A0A1W2PRE2 83 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 PRSS29PA6NIE9 313 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 LAGE3Q14657 143 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 RETNQ9HD89 108 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 IGLV3-9A0A075B6K5 115 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 FAM90A9PA6NNJ1 464 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 FOXE3Q13461 319 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 GUSBP1Q15486 140 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 PNRC2Q9NPJ4 139 aaKnown RBP5.87□□□□□ -1.47
VPS13A-202ENST00000357409 SPOCK3Q9BQ16 436 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 FOXI1Q12951 378 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 NKAPP1Q8N9T2 125 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 PCP4P48539 62 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 DTX1Q86Y01 620 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 TP53TG1Q9Y2A0 90 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 CRYGCP07315 174 aa5.87□□□□□ -1.47
VPS13A-202ENST00000357409 NUP214P35658 2090 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-202ENST00000357409 C9JAW5 83 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 E9PQ18 207 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 TNFSF13O75888 250 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 ZNF562Q6V9R5 426 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 PRR25Q96S07 402 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 PROK2Q9HC23 129 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 LINC00482Q8N8I6 264 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 LYPD6BQ8NI32 183 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 VWC2Q2TAL6 325 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 ORMDL2Q53FV1 153 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-202ENST00000357409 IGKV2-24A0A0C4DH68 120 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 GTSF1Q8WW33 167 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 WDR83OSQ9Y284 106 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 J3QW42 95 aa5.86□□□□□ -1.47
VPS13A-202ENST00000357409 RNASE2P10153 161 aaKnown RBP5.86□□□□□ -1.47
VPS13A-202ENST00000357409 DAZ1Q9NQZ3 744 aaKnown RBP5.85□□□□□ -1.47
VPS13A-202ENST00000357409 hADV29S1A0JD25 119 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 C19orf84I3L1E1 186 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 VCYO14598 125 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 DEFB135Q30KP9 77 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 AJUBAQ96IF1 538 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 TRBV25-1A0A075B6N4 114 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 C17orf58Q2M2W7 97 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 LY6G6FQ5SQ64 297 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 CRIPAKQ8N1N5 446 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 F8WEM9 126 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 TNFRSF6BO95407 300 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 ZC2HC1AQ96GY0 325 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 BTCP35070 178 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 ZNF134P52741 427 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 MINOS1Q5TGZ0 78 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 MINOS1-NBL1R4GNA1 71 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 ARHGEF17Q96PE2 2063 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-202ENST00000357409 GP9P14770 177 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 HIGD2BQ4VC39 106 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 C2orf82Q6UX34 121 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 MAST2Q6P0Q8 1798 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 DEFB125Q8N687 156 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 SMIM2Q9BVW6 85 aa5.85□□□□□ -1.47
VPS13A-202ENST00000357409 FRMPD3Q5JV73 1810 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 ZC2HC1BQ5TFG8 222 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 CTSZQ9UBR2 303 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 LAMTOR2Q9Y2Q5 125 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 LAMB1P07942 1786 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 F5P12259 2224 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 ELANEP08246 267 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 SPTBP11277 2137 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 C15orf62A8K5M9 175 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 EREGO14944 169 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 SUPT4H1P63272 117 aaKnown RBP5.84□□□□□ -1.47
VPS13A-202ENST00000357409 CRLF1O75462 422 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 ID3Q02535 119 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 ADAMTSL5Q6ZMM2 481 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 IGHV2-70DA0A0C4DH43 119 aa5.84□□□□□ -1.47
VPS13A-202ENST00000357409 PLNP26678 52 aa5.84□□□□□ -1.48
VPS13A-202ENST00000357409 SAMD5Q5TGI4 173 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 AMTNQ6UX39 209 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 RASL10AQ92737 203 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 SPATA25Q9BR10 227 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 NCR3O14931 201 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 ZNF479Q96JC4 524 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 SEM1Q6ZVN7 128 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 ZNF503Q96F45 646 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 RALGAPA1Q6GYQ0 2036 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 IGHV4OR15-8A0A075B7B6 117 aa5.83□□□□□ -1.48
VPS13A-202ENST00000357409 A0A087WW49 117 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms