RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CGB1A6NKQ9 187 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 H0Y8G0 127 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 SAP30O75446 220 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 MC5RP33032 325 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 LYPD1Q8N2G4 141 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 A0A1W2PPM0 123 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 H3BUT2 72 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 CSN3P07498 182 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 LGALS7P47929 136 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 LINC01559Q495D7 138 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 LINC01560Q8TB33 94 aa12.61□□□□□ -0.39
HMGA1-202ENST00000347617 OVOL3O00110 214 aa12.6□□□□□ -0.39
HMGA1-202ENST00000347617 PLAUP00749 431 aa12.6□□□□□ -0.39
HMGA1-202ENST00000347617 FABP2P12104 132 aa12.6□□□□□ -0.39
HMGA1-202ENST00000347617 CD24P25063 80 aa12.6□□□□□ -0.39
HMGA1-202ENST00000347617 ZNF138P52744 262 aa12.6□□□□□ -0.39
HMGA1-202ENST00000347617 CCL8P80075 99 aa12.6□□□□□ -0.39
HMGA1-202ENST00000347617 HIGD1BQ9P298 99 aa12.6□□□□□ -0.39
HMGA1-202ENST00000347617 IGLV2-23P01705 113 aa12.59□□□□□ -0.39
HMGA1-202ENST00000347617 ADAMTSL5Q6ZMM2 481 aa12.59□□□□□ -0.39
HMGA1-202ENST00000347617 SGK494Q96LW2 274 aa12.59□□□□□ -0.39
HMGA1-202ENST00000347617 JMJD8Q96S16 334 aa12.59□□□□□ -0.39
HMGA1-202ENST00000347617 CHD8Q9HCK8 2581 aa12.59□□□□□ -0.39
HMGA1-202ENST00000347617 TMEM178BH3BS89 294 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 IGLV2-11P01706 119 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 HBDP02042 147 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 TMEM11P17152 192 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 LOXP28300 417 aaPredicted RBP12.58□□□□□ -0.39
HMGA1-202ENST00000347617 UQCRFS1P47985 274 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 RIPPLY3P57055 190 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 PSG3Q16557 428 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 ZNF672Q499Z4 452 aaPredicted RBP12.58□□□□□ -0.39
HMGA1-202ENST00000347617 PRNTQ86SH4 94 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 CIARTQ8N365 385 aaPredicted RBP12.58□□□□□ -0.39
HMGA1-202ENST00000347617 SRSF12Q8WXF0 261 aaKnown RBP12.58□□□□□ -0.39
HMGA1-202ENST00000347617 CCL13Q99616 98 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 DYNLRB1Q9NP97 96 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 SPCS1Q9Y6A9 102 aa12.58□□□□□ -0.39
HMGA1-202ENST00000347617 A0A1W2PPI3 338 aa12.58□□□□□ -0.4
HMGA1-202ENST00000347617 TMEM189A5PLL7 270 aa12.58□□□□□ -0.4
HMGA1-202ENST00000347617 E7EUB6 86 aa12.58□□□□□ -0.4
HMGA1-202ENST00000347617 TNFRSF13BO14836 293 aaPredicted RBP12.58□□□□□ -0.4
HMGA1-202ENST00000347617 ARMS2P0C7Q2 107 aa12.58□□□□□ -0.4
HMGA1-202ENST00000347617 MRPL36Q9P0J6 103 aaKnown RBP12.58□□□□□ -0.4
HMGA1-202ENST00000347617 PPIAL4EA0A075B759 164 aa12.57□□□□□ -0.4
HMGA1-202ENST00000347617 NCR2O95944 276 aa12.57□□□□□ -0.4
HMGA1-202ENST00000347617 SMIM13P0DJ93 91 aa12.57□□□□□ -0.4
HMGA1-202ENST00000347617 PPIAL4FP0DN26 164 aa12.57□□□□□ -0.4
HMGA1-202ENST00000347617 GRNP28799 593 aaKnown RBP12.57□□□□□ -0.4
HMGA1-202ENST00000347617 S100A7AQ86SG5 101 aa12.57□□□□□ -0.4
HMGA1-202ENST00000347617 SERTM2A0A1B0GWG4 89 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 CDSNQ15517 529 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 FAM201AQ5SY85 155 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 GOLT1AQ6ZVE7 132 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 ORMDL3Q8N138 153 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 FAM216BQ8N7L0 139 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 OR8A1Q8NGG7 326 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 ZNF414Q96IQ9 312 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 SPOCK3Q9BQ16 436 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 MCRIP2Q9BUT9 160 aaKnown RBP12.56□□□□□ -0.4
HMGA1-202ENST00000347617 KAAG1Q9UBP8 84 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 ICE1Q9Y2F5 2266 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 HLA-DRB4P13762 266 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 SAMD13Q5VXD3 122 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 PRELID3AQ96N28 172 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 SIGLEC8Q9NYZ4 499 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 THYN1Q9P016 225 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 HLA-DRB4X5D2U9 266 aa12.56□□□□□ -0.4
HMGA1-202ENST00000347617 A0A096LNJ9 63 aa12.55□□□□□ -0.4
HMGA1-202ENST00000347617 FBLL1A6NHQ2 334 aaKnown RBP12.55□□□□□ -0.4
HMGA1-202ENST00000347617 J3QR89 54 aa12.55□□□□□ -0.4
HMGA1-202ENST00000347617 RPL27AP46776 148 aaKnown RBP12.55□□□□□ -0.4
HMGA1-202ENST00000347617 FAM104BQ5XKR9 115 aa12.55□□□□□ -0.4
HMGA1-202ENST00000347617 DUX4L9Q6RFH8 374 aaPredicted RBP12.55□□□□□ -0.4
HMGA1-202ENST00000347617 SLC25A39Q9BZJ4 359 aaPredicted RBP12.55□□□□□ -0.4
HMGA1-202ENST00000347617 ATRXP46100 2492 aa12.55□□□□□ -0.4
HMGA1-202ENST00000347617 IFI27P40305 119 aaPredicted RBP12.54□□□□□ -0.4
HMGA1-202ENST00000347617 C10orf55Q5SWW7 151 aa12.54□□□□□ -0.4
HMGA1-202ENST00000347617 DEFB108BQ8NET1 73 aa12.54□□□□□ -0.4
HMGA1-202ENST00000347617 TNFRSF14Q92956 283 aa12.54□□□□□ -0.4
HMGA1-202ENST00000347617 IFI27L1Q96BM0 104 aa12.54□□□□□ -0.4
HMGA1-202ENST00000347617 ZC2HC1AQ96GY0 325 aa12.54□□□□□ -0.4
HMGA1-202ENST00000347617 PSG8Q9UQ74 426 aa12.54□□□□□ -0.4
HMGA1-202ENST00000347617 TIMM8BQ9Y5J9 83 aaPredicted RBP12.54□□□□□ -0.4
HMGA1-202ENST00000347617 ZZEF1O43149 2961 aa12.54□□□□□ -0.4
HMGA1-202ENST00000347617 SNAI2O43623 268 aa12.53□□□□□ -0.4
HMGA1-202ENST00000347617 CACNG7P62955 275 aa12.53□□□□□ -0.4
HMGA1-202ENST00000347617 SAMD5Q5TGI4 173 aa12.53□□□□□ -0.4
HMGA1-202ENST00000347617 PLGLAQ15195 96 aa12.53□□□□□ -0.4
HMGA1-202ENST00000347617 PIP4P2Q8N4L2 257 aa12.53□□□□□ -0.4
HMGA1-202ENST00000347617 ITLN2Q8WWU7 325 aaPredicted RBP12.53□□□□□ -0.4
HMGA1-202ENST00000347617 CCL17Q92583 94 aa12.53□□□□□ -0.4
HMGA1-202ENST00000347617 SRSF8Q9BRL6 282 aaKnown RBP12.53□□□□□ -0.4
HMGA1-202ENST00000347617 F11RQ9Y624 299 aaKnown RBP12.53□□□□□ -0.4
HMGA1-202ENST00000347617 TRBV19A0A075B6N1 114 aa12.52□□□□□ -0.41
HMGA1-202ENST00000347617 ZNF207O43670 478 aaKnown RBP12.52□□□□□ -0.41
HMGA1-202ENST00000347617 SLC25A17O43808 307 aa12.52□□□□□ -0.41
HMGA1-202ENST00000347617 IGHV3-48P01763 117 aa12.52□□□□□ -0.41
HMGA1-202ENST00000347617 SRSF1Q07955 248 aaKnown RBP eCLIP12.52□□□□□ -0.41
HMGA1-202ENST00000347617 PRR31Q5SQ13 230 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms