RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 MRPL35Q9NZE8 188 aaKnown RBP3.28□□□□□ -1.88
NEDD4-201ENST00000338963 WI2-2373I1.2A0A1W2PRP0 233 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 RNF144BQ7Z419 303 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM141Q96I45 108 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 DOCK1Q14185 1865 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 DNAL4O96015 105 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 CISD3P0C7P0 127 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 PRCDQ00LT1 54 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 FAM222AQ5U5X8 452 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 CRIP3Q6Q6R5 217 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 CD164L2Q6UWJ8 174 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF441Q8N8Z8 693 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 SCGB3A1Q96QR1 104 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 NYNRINQ9P2P1 1898 aaKnown RBP3.28□□□□□ -1.88
NEDD4-201ENST00000338963 INS-IGF2F8WCM5 200 aa3.28□□□□□ -1.89
NEDD4-201ENST00000338963 IGKV1-27A0A075B6S5 117 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 M0R3E3 92 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 CCL16O15467 120 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 HS3ST6Q96QI5 342 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 DSCR8Q96T75 97 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 IGKV2D-26A0A0A0MRZ7 120 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 IGHV1-69DA0A0B4J2H0 117 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 FOXS1O43638 330 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 RNF182Q8N6D2 247 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 COL4A1P02462 1669 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 COL18A1P39060 1754 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 A0A096LNJ9 63 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 TRBV7-1A0A0A6YYK4 115 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 C17orf98A8MV24 154 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 CXCL13O43927 109 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 FCGR3BO75015 233 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 ELANEP08246 267 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 C3orf56Q8N813 242 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 C10orf105Q8TEF2 133 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 TRBV19A0A075B6N1 114 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 IGKV1D-43A0A0B4J1Z2 117 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 ZNF785A8K8V0 405 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 ARMS2P0C7Q2 107 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 CD40P25942 277 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 MRPL51Q4U2R6 128 aaKnown RBP3.27□□□□□ -1.89
NEDD4-201ENST00000338963 BRK1Q8WUW1 75 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 FNDC1Q4ZHG4 1894 aaPredicted RBP3.27□□□□□ -1.89
NEDD4-201ENST00000338963 NDUFB3O43676 98 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 IGHV4-39P01824 125 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 TCF15Q12870 199 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 PLXDC1Q8IUK5 500 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 COL14A1Q05707 1796 aaKnown RBP3.27□□□□□ -1.89
NEDD4-201ENST00000338963 SDHAF1A6NFY7 115 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 TMEM178BH3BS89 294 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 WNT9BO14905 357 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 RSPO1Q2MKA7 263 aaPredicted RBP3.27□□□□□ -1.89
NEDD4-201ENST00000338963 SLC50A1Q9BRV3 221 aa3.27□□□□□ -1.89
NEDD4-201ENST00000338963 C11orf68Q9H3H3 251 aaKnown RBP3.27□□□□□ -1.89
NEDD4-201ENST00000338963 IGLV3-32A0A0A0MS00 114 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 A0A0J9YX75 114 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 TRBV10-3A0A0K0K1G6 114 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 A0A1W2PRX2 142 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 SDIM1Q6ZPB5 146 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 EMC6Q9BV81 110 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 SRXN1Q9BYN0 137 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 Q9H3A6 140 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 DPH3P1Q9H4G8 78 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 MYH9P35579 1960 aaKnown RBP3.26□□□□□ -1.89
NEDD4-201ENST00000338963 TRAV26-2A0A0B4J265 109 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 LY6LH3BQJ8 138 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 EDN2P20800 178 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 PDE6HQ13956 83 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 ZNF672Q499Z4 452 aaPredicted RBP3.26□□□□□ -1.89
NEDD4-201ENST00000338963 VKORC1L1Q8N0U8 176 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 C16orf92Q96LL3 132 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 RETNQ9HD89 108 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 GNG12Q9UBI6 72 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 ARID2Q68CP9 1835 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 NDUFA3O95167 84 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 ZFP2Q6ZN57 461 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 SLC25A29Q8N8R3 303 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 ZSWIM8A7E2V4 1837 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 PLAC8L1A1L4L8 177 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 C17orf100A8MU93 164 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 EFNA4P52798 201 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 HOXA4Q00056 320 aaPredicted RBP3.26□□□□□ -1.89
NEDD4-201ENST00000338963 LYZL1Q6UWQ5 148 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 SLC25A45Q8N413 288 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 PCM1Q15154 2024 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 TEX49A0A1B0GTD5 131 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 USP17L23D6RBM5 183 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 IGHV3-33P01772 117 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 LINC00305Q7Z4B0 112 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 DYNLRB2Q8TF09 96 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 VKORC1Q9BQB6 163 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 ANKRD36A6QL64 1941 aa3.26□□□□□ -1.89
NEDD4-201ENST00000338963 WT1P19544 449 aaPredicted RBP3.25□□□□□ -1.89
NEDD4-201ENST00000338963 STHQ8IWL8 128 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 THAP8Q8NA92 274 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 C11orf86A6NJI1 115 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 C16orf97H3BN30 126 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 LST1O00453 97 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 IGHV3-30P01768 117 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 IGHV3-30-5P0DP03 117 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 RPS21P63220 83 aaKnown RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms