RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 ATP5L2Q7Z4Y8 100 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 IGLV10-54A0A075B6I4 117 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 M0R2P5 195 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 ATRAIDQ6UW56 229 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 SLC25A2Q9BXI2 301 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 F8W735 103 aaPredicted RBP6.26□□□□□ -1.41
SCN9A-201ENST00000303354 IFI6P09912 130 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 CMC4P56277 68 aaPredicted RBP6.26□□□□□ -1.41
SCN9A-201ENST00000303354 RPL18AQ02543 176 aaKnown RBP6.26□□□□□ -1.41
SCN9A-201ENST00000303354 FBLIM1Q8WUP2 373 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 FAM215AQ9Y5M1 114 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 DOCK4Q8N1I0 1966 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 CSRP3P50461 194 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 WDR86Q86TI4 376 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 THAP8Q8NA92 274 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 PIFOQ8TCI5 191 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 TMEM158Q8WZ71 300 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 KNTC1P50748 2209 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 C22orf46C9J442 243 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 UBE2BP63146 152 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 GLRX5Q86SX6 157 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 TMEM126AQ9H061 195 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 TMEM242Q9NWH2 141 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 ANAPC10Q9UM13 185 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 TRAV8-3A0A0A6YYJ7 113 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 BLCAPP62952 87 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 C1QTNF4Q9BXJ3 329 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 TICRRQ7Z2Z1 1910 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 PRB2P02812 416 aaPredicted RBP6.25□□□□□ -1.41
SCN9A-201ENST00000303354 ORAOV1Q8WV07 137 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 C17orf77Q96MU5 243 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 CITED2Q99967 270 aaPredicted RBP6.25□□□□□ -1.41
SCN9A-201ENST00000303354 INAFM1C9JVW0 142 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 F8WEM9 126 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 VWC2Q2TAL6 325 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 NHLRC3Q5JS37 347 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 NRN1Q9NPD7 142 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 IGLL5B9A064 214 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 NDUFS5O43920 106 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 IFITM2Q01629 132 aa6.25□□□□□ -1.41
SCN9A-201ENST00000303354 IGLV3-9A0A075B6K5 115 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 GREB1Q4ZG55 1949 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 PMVKQ15126 192 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 PRIMA1Q86XR5 153 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 GGTLC3B5MD39 225 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 C17orf58Q2M2W7 97 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 NKAPP1Q8N9T2 125 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 RITA1Q96K30 269 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 SPCS1Q9Y6A9 102 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 LRCOL1A6NCL2 159 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 RNASE2P10153 161 aaKnown RBP6.24□□□□□ -1.41
SCN9A-201ENST00000303354 XCL1P47992 114 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 ADORA2A-AS1P86434 159 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 TRBV9A0A0B4J1U6 114 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 GNRH2O43555 120 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 ARID2Q68CP9 1835 aa6.24□□□□□ -1.41
SCN9A-201ENST00000303354 Q6ZRM9 215 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 DTX1Q86Y01 620 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 TSSC4Q9Y5U2 329 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-201ENST00000303354 IFI27L1Q96BM0 104 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 TMEM75Q8N9X5 138 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 TIMM17AQ99595 171 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 C9orf139Q6ZV77 190 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 GSN-AS1Q9NRJ2 163 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 GREB1LQ9C091 1923 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-201ENST00000303354 SNRNP200O75643 2136 aaKnown RBP6.23□□□□□ -1.41
SCN9A-201ENST00000303354 RALGAPA1Q6GYQ0 2036 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 H3BMM0 161 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 GP9P14770 177 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 BTCP35070 178 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 UBE2WQ96B02 151 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 LOXP28300 417 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-201ENST00000303354 SVILO95425 2214 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 RASL11AQ6T310 242 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 NUP35Q8NFH5 326 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 OR2K2Q8NGT1 345 aa6.23□□□□□ -1.41
SCN9A-201ENST00000303354 TRBV25-1A0A075B6N4 114 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 SHISA9B4DS77 424 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 ATP5IP56385 69 aaPredicted RBP6.22□□□□□ -1.41
SCN9A-201ENST00000303354 WDR83OSQ9Y284 106 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 THSD7BQ9C0I4 1608 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 PRSS29PA6NIE9 313 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 AGMATQ9BSE5 352 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 MEGF9Q9H1U4 602 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 DEFB1P60022 68 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 TAL2Q16559 108 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 RASL10AQ92737 203 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 FAM110AQ9BQ89 295 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 F2Z2F3 143 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 PIP4P1Q86T03 277 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 GAGE2EQ4V326 116 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 GAGE2DQ9UEU5 116 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 ITGB1BP1O14713 200 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 ORMDL2Q53FV1 153 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 LY6G6FQ5SQ64 297 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 TRAV9-2A0A087WT02 112 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 C19orf84I3L1E1 186 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 SUPT4H1P63272 117 aaKnown RBP6.22□□□□□ -1.41
SCN9A-201ENST00000303354 TRAV8-4A0A0B4J246 113 aa6.22□□□□□ -1.41
SCN9A-201ENST00000303354 LMO1P25800 156 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms