RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 C18orf32Q8TCD1 76 aa18.68■□□□□ 0.58
TRIM54-201ENST00000296098 IGHV4-61A0A0C4DH41 118 aa18.67■□□□□ 0.58
TRIM54-201ENST00000296098 GPX1P07203 203 aa18.67■□□□□ 0.58
TRIM54-201ENST00000296098 GPR183P32249 361 aa18.67■□□□□ 0.58
TRIM54-201ENST00000296098 C5orf56Q8N8D9 126 aa18.67■□□□□ 0.58
TRIM54-201ENST00000296098 OR2D3Q8NGH3 330 aa18.67■□□□□ 0.58
TRIM54-201ENST00000296098 S100A7P31151 101 aa18.67■□□□□ 0.58
TRIM54-201ENST00000296098 C10orf105Q8TEF2 133 aa18.67■□□□□ 0.58
TRIM54-201ENST00000296098 A0A1W2PS18 150 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 SH2D7A6NKC9 451 aaPredicted RBP18.66■□□□□ 0.58
TRIM54-201ENST00000296098 CSN1S1P47710 185 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 AMTP48728 403 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 PIEZO1Q92508 2521 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 IGHV3OR16-10A0A075B7F0 116 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 IGHV1-69DA0A0B4J2H0 117 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 IGHV1-69P01742 117 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 CD33P20138 364 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 C14orf144Q96I85 54 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 AKAP6Q13023 2319 aa18.66■□□□□ 0.58
TRIM54-201ENST00000296098 SERTM2A0A1B0GWG4 89 aa18.65■□□□□ 0.58
TRIM54-201ENST00000296098 ZNF785A8K8V0 405 aa18.65■□□□□ 0.58
TRIM54-201ENST00000296098 ZNF705FA8MVS1 300 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-201ENST00000296098 A8MWP6 167 aa18.65■□□□□ 0.58
TRIM54-201ENST00000296098 NDUFS8O00217 210 aa18.65■□□□□ 0.58
TRIM54-201ENST00000296098 ZNF324O75467 553 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-201ENST00000296098 ZNF705DP0CH99 300 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-201ENST00000296098 ZNF705BP0CI00 300 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-201ENST00000296098 PRB4P10163 310 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-201ENST00000296098 PMCHP20382 165 aa18.65■□□□□ 0.58
TRIM54-201ENST00000296098 KLF5Q13887 457 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-201ENST00000296098 MOB4Q9Y3A3 225 aa18.65■□□□□ 0.58
TRIM54-201ENST00000296098 ABCA2Q9BZC7 2435 aa18.64■□□□□ 0.58
TRIM54-201ENST00000296098 G3V318 75 aa18.64■□□□□ 0.58
TRIM54-201ENST00000296098 TOMM20LQ6UXN7 152 aa18.64■□□□□ 0.58
TRIM54-201ENST00000296098 REC114Q7Z4M0 266 aa18.64■□□□□ 0.58
TRIM54-201ENST00000296098 ASCL2Q99929 193 aa18.64■□□□□ 0.58
TRIM54-201ENST00000296098 ALKBH7Q9BT30 221 aaPredicted RBP18.64■□□□□ 0.58
TRIM54-201ENST00000296098 LINC01548A6NM66 108 aa18.64■□□□□ 0.57
TRIM54-201ENST00000296098 CLEC2AQ6UVW9 174 aa18.64■□□□□ 0.57
TRIM54-201ENST00000296098 TRAV40A0A0B4J280 105 aa18.63■□□□□ 0.57
TRIM54-201ENST00000296098 IGHV3-35A0A0C4DH35 117 aa18.63■□□□□ 0.57
TRIM54-201ENST00000296098 TMEM219Q86XT9 240 aa18.63■□□□□ 0.57
TRIM54-201ENST00000296098 CCDC140Q96MF4 163 aa18.62■□□□□ 0.57
TRIM54-201ENST00000296098 IGHV3OR16-8A0A075B7F1 116 aa18.62■□□□□ 0.57
TRIM54-201ENST00000296098 CLEC3BP05452 202 aa18.62■□□□□ 0.57
TRIM54-201ENST00000296098 ATP5J2P56134 94 aa18.62■□□□□ 0.57
TRIM54-201ENST00000296098 ARL6IP6Q8N6S5 226 aa18.62■□□□□ 0.57
TRIM54-201ENST00000296098 ZFAND3Q9H8U3 227 aa18.62■□□□□ 0.57
TRIM54-201ENST00000296098 NRN1Q9NPD7 142 aa18.62■□□□□ 0.57
TRIM54-201ENST00000296098 CT45A10P0DMU9 189 aa18.61■□□□□ 0.57
TRIM54-201ENST00000296098 BRD3OSQ6XYD6 125 aa18.61■□□□□ 0.57
TRIM54-201ENST00000296098 EEF1AKMT3Q96AZ1 226 aa18.61■□□□□ 0.57
TRIM54-201ENST00000296098 SMAD5-AS1Q9Y6J3 95 aa18.61■□□□□ 0.57
TRIM54-201ENST00000296098 C1orf194Q5T5A4 169 aa18.61■□□□□ 0.57
TRIM54-201ENST00000296098 RNF114Q9Y508 228 aa18.61■□□□□ 0.57
TRIM54-201ENST00000296098 KIR2DL5BA0A0G2JN68 375 aa18.6■□□□□ 0.57
TRIM54-201ENST00000296098 KIR2DL5BA0A0G2JPC4 375 aa18.6■□□□□ 0.57
TRIM54-201ENST00000296098 TEX43Q6ZNM6 134 aa18.6■□□□□ 0.57
TRIM54-201ENST00000296098 KIR2DL5AQ8N109 375 aa18.6■□□□□ 0.57
TRIM54-201ENST00000296098 C8orf49Q96NF6 230 aa18.6■□□□□ 0.57
TRIM54-201ENST00000296098 ASH1LQ9NR48 2969 aaKnown RBP18.6■□□□□ 0.57
TRIM54-201ENST00000296098 HAX1O00165 279 aa18.59■□□□□ 0.57
TRIM54-201ENST00000296098 FOXA3P55318 350 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-201ENST00000296098 KRTDAPP60985 99 aa18.59■□□□□ 0.57
TRIM54-201ENST00000296098 CLEC19AQ6UXS0 136 aa18.59■□□□□ 0.57
TRIM54-201ENST00000296098 IGKV2-40A0A087WW87 121 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-201ENST00000296098 IGKV2D-40P01614 121 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-201ENST00000296098 APOHP02749 345 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-201ENST00000296098 CRIP1P50238 77 aa18.59■□□□□ 0.57
TRIM54-201ENST00000296098 RAB9AP51151 201 aa18.59■□□□□ 0.57
TRIM54-201ENST00000296098 PRR31Q5SQ13 230 aa18.59■□□□□ 0.57
TRIM54-201ENST00000296098 NDUFAF3Q9BU61 184 aa18.59■□□□□ 0.57
TRIM54-201ENST00000296098 IGHV4-30-2A0A087WSY4 118 aa18.58■□□□□ 0.56
TRIM54-201ENST00000296098 TRBV7-1A0A0A6YYK4 115 aa18.58■□□□□ 0.56
TRIM54-201ENST00000296098 CHEK1O14757 476 aa18.58■□□□□ 0.56
TRIM54-201ENST00000296098 PIFOQ8TCI5 191 aa18.58■□□□□ 0.56
TRIM54-201ENST00000296098 NIT1Q86X76 327 aa18.57■□□□□ 0.56
TRIM54-201ENST00000296098 FAM19A2Q8N3H0 131 aa18.57■□□□□ 0.56
TRIM54-201ENST00000296098 TRAV41A0A0B4J266 112 aa18.57■□□□□ 0.56
TRIM54-201ENST00000296098 FBLL1A6NHQ2 334 aaKnown RBP18.57■□□□□ 0.56
TRIM54-201ENST00000296098 NTF3P20783 257 aa18.57■□□□□ 0.56
TRIM54-201ENST00000296098 MEGF9Q9H1U4 602 aa18.57■□□□□ 0.56
TRIM54-201ENST00000296098 HSBP1O75506 76 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 RNF224P0DH78 156 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 CSMD1Q96PZ7 3565 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 CFAP46Q8IYW2 2715 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 A0A087X0K7 114 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 A0A1B0GUT8 65 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 IGHV4-38-2P0DP08 117 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 CRIP2P52943 208 aaPredicted RBP18.56■□□□□ 0.56
TRIM54-201ENST00000296098 C19orf54Q5BKX5 351 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 Q6AWC8 147 aa18.56■□□□□ 0.56
TRIM54-201ENST00000296098 RNASEKQ6P5S7 137 aaKnown RBP18.56■□□□□ 0.56
TRIM54-201ENST00000296098 BUB3O43684 328 aa18.55■□□□□ 0.56
TRIM54-201ENST00000296098 SAPCD1Q5SSQ6 148 aa18.55■□□□□ 0.56
TRIM54-201ENST00000296098 LOC102724200A0A096LPH7 203 aaPredicted RBP18.54■□□□□ 0.56
TRIM54-201ENST00000296098 RELQ04864 619 aaPredicted RBP18.54■□□□□ 0.56
TRIM54-201ENST00000296098 ATP5G2Q06055 141 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 COX8CQ7Z4L0 72 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 SPOCK3Q9BQ16 436 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms