RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TRBV6-6A0A0A6YYG2 114 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 GLRXP35754 106 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 NMSQ5H8A3 153 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 CT83Q5H943 113 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 RASL10AQ92737 203 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 ZNF474Q6S9Z5 364 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-201ENST00000295550 MYMXA0A1B0GTQ4 84 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 PRB4P10163 310 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-201ENST00000295550 CDKN1AP38936 164 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 RHOGP84095 191 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 FAM216BQ8N7L0 139 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 AGMATQ9BSE5 352 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 ATG2AQ2TAZ0 1938 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 IGKV1-12A0A0C4DH73 117 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 EREGO14944 169 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 IGKV1D-12P01611 117 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 LINC01551Q86U37 167 aa8.13□□□□□ -1.11
COL6A3-201ENST00000295550 UPK2O00526 184 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 UCNP55089 124 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 EXOC3-AS1Q8N2X6 119 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 NPIPB5A8MRT5 1133 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 PYY3Q5JQD4 70 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 ADCYAP1P18509 176 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 FOXL2NBQ6ZUU3 175 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 SMAD7O15105 426 aaKnown RBP8.12□□□□□ -1.11
COL6A3-201ENST00000295550 RPL15P61313 204 aaKnown RBP8.12□□□□□ -1.11
COL6A3-201ENST00000295550 CSTL1Q9H114 145 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 ETV2O00321 342 aaPredicted RBP8.12□□□□□ -1.11
COL6A3-201ENST00000295550 OR9G9P0C7N8 305 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 SRD5A1P18405 259 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 C8orf46Q8TAG6 207 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 ATP6V0BQ99437 205 aa8.12□□□□□ -1.11
COL6A3-201ENST00000295550 CD5LO43866 347 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 C3orf79P0CE67 100 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 KLHDC3Q9BQ90 382 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 PRADC1Q9BSG0 188 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 A8MWP6 167 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 PSG7Q13046 419 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 ZNF114Q8NC26 417 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 VSIRQ9H7M9 311 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 FAM231BA6NCW3 169 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 IGHV1-2P23083 117 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 DUSP14O95147 198 aaKnown RBP8.11□□□□□ -1.11
COL6A3-201ENST00000295550 ZFP36L1Q07352 338 aaKnown RBP8.11□□□□□ -1.11
COL6A3-201ENST00000295550 MUC6Q6W4X9 2439 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 SETD2Q9BYW2 2564 aaPredicted RBP8.11□□□□□ -1.11
COL6A3-201ENST00000295550 SP9P0CG40 484 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 LYZL1Q6UWQ5 148 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 MRPL27Q9P0M9 148 aaKnown RBP8.11□□□□□ -1.11
COL6A3-201ENST00000295550 YPEL1O60688 119 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 ZNF664Q8N3J9 261 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 YPEL2Q96QA6 119 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 SPANXDQ9BXN6 97 aa8.11□□□□□ -1.11
COL6A3-201ENST00000295550 OVOL1O14753 267 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 C10orf91Q5T1B1 145 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 SSC4DQ8WTU2 575 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 TRBV20-1A0A075B6N2 111 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 TMEM258P61165 79 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 PRCDQ00LT1 54 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 PRB3Q04118 309 aaPredicted RBP8.1□□□□□ -1.11
COL6A3-201ENST00000295550 MESP1Q9BRJ9 268 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 TSSC4Q9Y5U2 329 aaPredicted RBP8.1□□□□□ -1.11
COL6A3-201ENST00000295550 C9orf118A6NHY6 69 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 ATP1A1-AS1Q5TC04 95 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 TMEM158Q8WZ71 300 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 COLCA1Q6ZS62 124 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 VOPP1Q96AW1 172 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 SOCS3O14543 225 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 TCF15Q12870 199 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 SRRM4A7MD48 611 aaKnown RBP8.1□□□□□ -1.11
COL6A3-201ENST00000295550 NTN3O00634 580 aaPredicted RBP8.1□□□□□ -1.11
COL6A3-201ENST00000295550 FAM201AQ5SY85 155 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 SNHG12Q9BXW3 62 aa8.1□□□□□ -1.11
COL6A3-201ENST00000295550 DEFB104AQ8WTQ1 72 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 VCYO14598 125 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 LINC01560Q8TB33 94 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 FAM168AQ92567 244 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 F8W1H4 67 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 APOBEC3AP31941 199 aaPredicted RBP8.09□□□□□ -1.11
COL6A3-201ENST00000295550 PRSS57Q6UWY2 283 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 WFDC12Q8WWY7 111 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 TRAV13-1A0A0B4J241 112 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 K7EP34 96 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 C1orf159Q96HA4 380 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 A0A087WX48 190 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 SH2D1AO60880 128 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 C15orf32Q32M92 178 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 MORN2Q502X0 79 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 TMEM126AQ9H061 195 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 PMS2P5A8MQ11 134 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 AZU1P20160 251 aa8.09□□□□□ -1.11
COL6A3-201ENST00000295550 LRRK2Q5S007 2527 aa8.09□□□□□ -1.12
COL6A3-201ENST00000295550 SMKR1H3BMG3 65 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 ZC2HC1BQ5TFG8 222 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 TMEM133Q9H2Q1 129 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 TREML4Q6UXN2 200 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 NEGR1Q7Z3B1 354 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 MBNL3Q9NUK0 354 aaKnown RBP8.08□□□□□ -1.12
COL6A3-201ENST00000295550 DUTP33316 252 aaKnown RBP8.08□□□□□ -1.12
COL6A3-201ENST00000295550 POLR3KQ9Y2Y1 108 aaPredicted RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms