RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 NHP2Q9NX24 153 aaKnown RBP15.29■□□□□ 0.04
PTPRE-201ENST00000254667 SYNJ2BPP57105 145 aa15.29■□□□□ 0.04
PTPRE-201ENST00000254667 PRSS33Q8NF86 280 aa15.29■□□□□ 0.04
PTPRE-201ENST00000254667 PLXNA2O75051 1894 aa15.29■□□□□ 0.04
PTPRE-201ENST00000254667 TSPAN13O95857 204 aa15.29■□□□□ 0.04
PTPRE-201ENST00000254667 WISP1O95388 367 aa15.28■□□□□ 0.04
PTPRE-201ENST00000254667 C1orf194Q5T5A4 169 aa15.28■□□□□ 0.04
PTPRE-201ENST00000254667 PLEKHB2Q96CS7 222 aa15.28■□□□□ 0.04
PTPRE-201ENST00000254667 MRPL27Q9P0M9 148 aaKnown RBP15.28■□□□□ 0.04
PTPRE-201ENST00000254667 ZNF503-AS2A6NEH8 195 aa15.28■□□□□ 0.04
PTPRE-201ENST00000254667 RPL35AP18077 110 aaKnown RBP15.28■□□□□ 0.04
PTPRE-201ENST00000254667 TMEM75Q8N9X5 138 aa15.28■□□□□ 0.04
PTPRE-201ENST00000254667 TRAV2A0A0B4J234 112 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 HSD52Q0P140 79 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 OR5A1Q8NGJ0 315 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 ORAOV1Q8WV07 137 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 WDR81Q562E7 1941 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 TRAV8-1A0A0A6YYK1 113 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 TMEM238C9JI98 176 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 HOXA3O43365 443 aaPredicted RBP15.27■□□□□ 0.04
PTPRE-201ENST00000254667 TEX43Q6ZNM6 134 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 KAAG1Q9UBP8 84 aa15.27■□□□□ 0.04
PTPRE-201ENST00000254667 CD300EQ496F6 205 aaPredicted RBP15.27■□□□□ 0.03
PTPRE-201ENST00000254667 LRRK1Q38SD2 2015 aa15.27■□□□□ 0.03
PTPRE-201ENST00000254667 H3BUT2 72 aa15.27■□□□□ 0.03
PTPRE-201ENST00000254667 IGF2-ASQ6U949 168 aa15.27■□□□□ 0.03
PTPRE-201ENST00000254667 ZNF524Q96C55 264 aa15.27■□□□□ 0.03
PTPRE-201ENST00000254667 SELENOKQ9Y6D0 94 aa15.27■□□□□ 0.03
PTPRE-201ENST00000254667 RSPO3Q9BXY4 272 aaPredicted RBP15.26■□□□□ 0.03
PTPRE-201ENST00000254667 ZNRD1Q9P1U0 126 aa15.26■□□□□ 0.03
PTPRE-201ENST00000254667 ZNF492Q9P255 531 aa15.26■□□□□ 0.03
PTPRE-201ENST00000254667 ROS1P08922 2347 aa15.26■□□□□ 0.03
PTPRE-201ENST00000254667 TMEM249Q2WGJ8 235 aa15.26■□□□□ 0.03
PTPRE-201ENST00000254667 CACNA1BQ00975 2339 aa15.26■□□□□ 0.03
PTPRE-201ENST00000254667 IGLV3-1P01715 115 aa15.26■□□□□ 0.03
PTPRE-201ENST00000254667 RSPO1Q2MKA7 263 aaPredicted RBP15.26■□□□□ 0.03
PTPRE-201ENST00000254667 LINC01619G3V211 115 aa15.26■□□□□ 0.03
PTPRE-201ENST00000254667 C15orf65H3BRN8 121 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 PHF3Q92576 2039 aaKnown RBP15.25■□□□□ 0.03
PTPRE-201ENST00000254667 KIAA1671Q9BY89 1806 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 TYMSP04818 313 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 PRB4P10163 310 aaPredicted RBP15.25■□□□□ 0.03
PTPRE-201ENST00000254667 PAX2Q02962 417 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 FAM90A2PQ658T7 463 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 IGFL4Q6B9Z1 124 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 FAM231BA6NCW3 169 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 J3QKU1 62 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 C14orf178Q8N769 122 aaPredicted RBP15.25■□□□□ 0.03
PTPRE-201ENST00000254667 Q96MF0 132 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 MPDZO75970 2070 aa15.25■□□□□ 0.03
PTPRE-201ENST00000254667 CKS1BP61024 79 aa15.24■□□□□ 0.03
PTPRE-201ENST00000254667 C10orf126Q8N4M7 172 aa15.24■□□□□ 0.03
PTPRE-201ENST00000254667 RASL10AQ92737 203 aa15.24■□□□□ 0.03
PTPRE-201ENST00000254667 TP53BP1Q12888 1972 aaPredicted RBP15.24■□□□□ 0.03
PTPRE-201ENST00000254667 IGHV3-73A0A0B4J1V6 119 aa15.24■□□□□ 0.03
PTPRE-201ENST00000254667 DEFB131AP59861 70 aa15.24■□□□□ 0.03
PTPRE-201ENST00000254667 UBE2DNLQ8IWF7 75 aa15.24■□□□□ 0.03
PTPRE-201ENST00000254667 CSTL1Q9H114 145 aa15.24■□□□□ 0.03
PTPRE-201ENST00000254667 FXYD7P58549 80 aa15.23■□□□□ 0.03
PTPRE-201ENST00000254667 DIDO1Q9BTC0 2240 aaKnown RBP15.23■□□□□ 0.03
PTPRE-201ENST00000254667 C3orf56Q8N813 242 aa15.23■□□□□ 0.03
PTPRE-201ENST00000254667 LINC00158P58513 81 aa15.23■□□□□ 0.03
PTPRE-201ENST00000254667 PGPEP1Q9NXJ5 209 aa15.23■□□□□ 0.03
PTPRE-201ENST00000254667 CT83Q5H943 113 aa15.23■□□□□ 0.03
PTPRE-201ENST00000254667 IGFL2Q6UWQ7 119 aa15.23■□□□□ 0.03
PTPRE-201ENST00000254667 LSM4Q9Y4Z0 139 aaKnown RBP15.23■□□□□ 0.03
PTPRE-201ENST00000254667 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.22■□□□□ 0.03
PTPRE-201ENST00000254667 NDUFA4O00483 81 aa15.22■□□□□ 0.03
PTPRE-201ENST00000254667 IL17RELQ6ZVW7 336 aa15.22■□□□□ 0.03
PTPRE-201ENST00000254667 UBE2E2Q96LR5 201 aa15.22■□□□□ 0.03
PTPRE-201ENST00000254667 SLX1AQ9BQ83 275 aa15.22■□□□□ 0.03
PTPRE-201ENST00000254667 RHODO00212 210 aa15.22■□□□□ 0.03
PTPRE-201ENST00000254667 CR1LQ2VPA4 569 aa15.22■□□□□ 0.03
PTPRE-201ENST00000254667 CACNA1GO43497 2377 aa15.22■□□□□ 0.03
PTPRE-201ENST00000254667 DUX4L9Q6RFH8 374 aaPredicted RBP15.21■□□□□ 0.03
PTPRE-201ENST00000254667 C8orf31Q8N9H6 132 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 TRBV19A0A075B6N1 114 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 PAX9P55771 341 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 VOPP1Q96AW1 172 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 SPOCK3Q9BQ16 436 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 FANCMQ8IYD8 2048 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 ERCC8Q13216 396 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 C1orf122Q6ZSJ8 110 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 POLEQ07864 2286 aa15.21■□□□□ 0.03
PTPRE-201ENST00000254667 ANAPC1Q9H1A4 1944 aa15.21■□□□□ 0.02
PTPRE-201ENST00000254667 ARMS2P0C7Q2 107 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 IGHV3-53P01767 116 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 OR2K2Q8NGT1 345 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 LIME1Q9H400 295 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 TMEM14CQ9P0S9 112 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 IGKV1-39P01597 117 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 IGKV1D-39P04432 117 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 PFN1P07737 140 aaKnown RBP15.2■□□□□ 0.02
PTPRE-201ENST00000254667 DEFB121Q5J5C9 76 aa15.2■□□□□ 0.02
PTPRE-201ENST00000254667 TRPT1Q86TN4 253 aaKnown RBP15.2■□□□□ 0.02
PTPRE-201ENST00000254667 DOCK8Q8NF50 2099 aa15.19■□□□□ 0.02
PTPRE-201ENST00000254667 G3V318 75 aa15.19■□□□□ 0.02
PTPRE-201ENST00000254667 FRMPD3Q5JV73 1810 aa15.19■□□□□ 0.02
PTPRE-201ENST00000254667 FER1L5A0AVI2 2057 aa15.19■□□□□ 0.02
PTPRE-201ENST00000254667 M0R2P5 195 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms