RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GCHFRP30047 84 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 Q8TCH9 128 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 BADQ92934 168 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 ADGBQ8N7X0 1667 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 MROH2AA6NES4 1674 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 IQSEC2Q5JU85 1478 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 IGLL5B9A064 214 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 GYPEP15421 78 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF260Q3ZCT1 412 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 FAM19A3Q7Z5A8 133 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 TEN1Q86WV5 123 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 DAND5Q8N907 189 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 PYGO2Q9BRQ0 406 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 GLIPR2Q9H4G4 154 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM74BQ9NUR3 256 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 ARHGEF5Q12774 1597 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 C1QAP02745 245 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 REG3GQ6UW15 175 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 COMMD6Q7Z4G1 85 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 IL36RNQ9UBH0 155 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 ARFGEF2Q9Y6D5 1785 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 K7EMI3 77 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 COX6CP09669 75 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 HLA-DMBP28068 263 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 FRG2Q64ET8 278 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 FRG2BQ96QU4 278 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 IGKV1D-16P01601 117 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 PIRTP0C851 137 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 IAPPP10997 89 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 DCANP1Q8TF63 244 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 CHAC1Q9BUX1 264 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 PDCD6O75340 191 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 MFAP2P55001 183 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 RRN3P1Q2M238 152 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 PRNTQ86SH4 94 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 SPATA12Q7Z6I5 190 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 IGFBPL1Q8WX77 278 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 LINC00312Q9Y6C7 94 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 GLI4P10075 376 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 Q6ZSR3 168 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 TRAV4A0A0B4J268 109 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 ATXN8Q156A1 80 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 BEAN1Q3B7T3 259 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 SPANXN4Q5MJ08 99 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM252Q8N6L7 170 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 NDUFA3O95167 84 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 LINC00482Q8N8I6 264 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 AGPAT4-IT1Q9H0P7 198 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 ADAMTS9Q9P2N4 1935 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 K7ESM1 405 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 EDDM3BP56851 147 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 RPS28P62857 69 aaKnown RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 FAM19A1Q7Z5A9 133 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 RFPL3SP0C7P2 107 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 LYZL4Q96KX0 146 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 C17orf51A8MQB3 221 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 BLCAPP62952 87 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 SSBP1Q04837 148 aaKnown RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF441Q8N8Z8 693 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 HHLA3Q9XRX5 114 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 RNF17Q9BXT8 1623 aaKnown RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 LGALS1P09382 135 aaKnown RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 DYNLT3P51808 116 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 SNRPGP62308 76 aaKnown RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 FXYD3Q14802 87 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF672Q499Z4 452 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 RFLNBQ8N5W9 214 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 CLDND2Q8NHS1 167 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 FGF13Q92913 245 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 GABARAPL1Q9H0R8 117 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 HEG1Q9ULI3 1381 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 CCL22O00626 93 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 ZPLD1Q8TCW7 415 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 DYNLRB2Q8TF09 96 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 CHCHD1Q96BP2 118 aaKnown RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 CHD6Q8TD26 2715 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 TRBV19A0A075B6N1 114 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 J3QL48 77 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 PSPHP1O15172 72 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 STAB1Q9NY15 2570 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 SMIM35A0A1B0GVV1 85 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 TCRBV5S2A0A599 114 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 ORMDL3Q8N138 153 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 PLEKHB2Q96CS7 222 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 IMUPQ9GZP8 106 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 DIP2CQ9Y2E4 1556 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 ABCA9Q8IUA7 1624 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 UNC79Q9P2D8 2635 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 PFN3P60673 137 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 LAIR2Q6ISS4 152 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 FAM19A4Q96LR4 140 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 LINC00479Q96M42 142 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 C17orf77Q96MU5 243 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 CYTL1Q9NRR1 136 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 CELA1Q9UNI1 258 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 NWD2Q9ULI1 1742 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 DCCP43146 1447 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 TRBV24-1A0A075B6N3 115 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 SRSF10O75494 262 aaKnown RBP2.88□□□□□ -1.95
SCN1A-221ENST00000641996 DLEC1Q9Y238 1755 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms