RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 LYRM9A8MSI8 78 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 K7EM74 188 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 IGFBP6P24592 240 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-220ENST00000641603 GNG5P63218 68 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 FOXF2Q12947 444 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 C1orf43Q9BWL3 253 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 WDR81Q562E7 1941 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 LOC101059948A0A1B0GTJ6 334 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRSS29PA6NIE9 313 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 FGF6P10767 208 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 COX7A1P24310 79 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 WFDC8Q8IUA0 241 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 V9GYY9 64 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 THSD7AQ9UPZ6 1657 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 SRRM5B3KS81 715 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 SH2D1AO60880 128 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 FOXC1Q12948 553 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 UNQ6494/PRO21346Q6UXR6 183 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 LYZL4Q96KX0 146 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 DEFB127Q9H1M4 99 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 RBAKDNA6NC62 111 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 LOXL3P58215 753 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRR30Q53SZ7 412 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-220ENST00000641603 LOC102723996A0A087X1L8 192 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 CD3EP07766 207 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 SMIM2Q9BVW6 85 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 CHCHD2Q9Y6H1 151 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-220ENST00000641603 SHANK3Q9BYB0 1731 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PDCD11Q14690 1871 aaKnown RBP3.81□□□□□ -1.8
SCN1A-220ENST00000641603 IGHV1-45A0A0A0MS14 117 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 H0YGX0 51 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 RHODO00212 210 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 CD33P20138 364 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRSS12P56730 875 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 THAP8Q8NA92 274 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 HCSTQ9UBK5 93 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 NTF4P34130 210 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 RPL39P5Q59GN2 51 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 CDPF1Q6NVV7 123 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 TRPT1Q86TN4 253 aaKnown RBP3.81□□□□□ -1.8
SCN1A-220ENST00000641603 E9PLD3 99 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 TTTY12Q9BZ98 90 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 NDUFC2-KCTD14E9PQ53 114 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 NTN3O00634 580 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-220ENST00000641603 NAA38Q9BRA0 125 aaKnown RBP3.81□□□□□ -1.8
SCN1A-220ENST00000641603 INS-IGF2F8WCM5 200 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 M0R381 172 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRR20EP86478 221 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRR20CP86479 221 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRR20DP86480 221 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRR20BP86481 221 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PRR20AP86496 221 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 HCP5Q6MZN7 132 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 C3orf22Q8N5N4 141 aa3.81□□□□□ -1.8
SCN1A-220ENST00000641603 PYYP10082 97 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 C2orf66Q6UXQ4 117 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 HIST1H4AP62805 103 aaKnown RBP3.8□□□□□ -1.8
SCN1A-220ENST00000641603 GTSF1Q8WW33 167 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 BADQ92934 168 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 ATG2BQ96BY7 2078 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 TRBV10-2A0A0K0K1G8 114 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 LMO1P25800 156 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 LINC01620Q4KN68 170 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 DPM3Q9P2X0 92 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 NBR2O15453 112 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 NDUFS7O75251 213 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 CXCL5P42830 114 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 FOXG1P55316 489 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-220ENST00000641603 MRPL53Q96EL3 112 aaKnown RBP3.8□□□□□ -1.8
SCN1A-220ENST00000641603 PLPPR2Q96GM1 343 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 F5P12259 2224 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 DOCK8Q8NF50 2099 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 TRAV8-3A0A0A6YYJ7 113 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 CENPVL3A0A0U1RRI6 287 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 C1orf210Q8IVY1 113 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 LSM4Q9Y4Z0 139 aaKnown RBP3.8□□□□□ -1.8
SCN1A-220ENST00000641603 XIRP1Q702N8 1843 aaKnown RBP3.8□□□□□ -1.8
SCN1A-220ENST00000641603 Q6P435 159 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 CCL17Q92583 94 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 TMEM243Q9BU79 118 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 TSC2P49815 1807 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 M0QXV9 152 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 PF4P02776 101 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 TRAV40A0A0B4J280 105 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 IGHG2P01859 326 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 DEFB132Q7Z7B7 95 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 C8orf31Q8N9H6 132 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 RCHY1Q96PM5 261 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 JMJD8Q96S16 334 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 TRAV13-1A0A0B4J241 112 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 SAP30O75446 220 aa3.8□□□□□ -1.8
SCN1A-220ENST00000641603 CMC4P56277 68 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-220ENST00000641603 IGKV1D-43A0A0B4J1Z2 117 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 J3QQQ9 107 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 AGFG2O95081 481 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 OTOFQ9HC10 1997 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 C2orf70A6NJV1 201 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 MRPL51Q4U2R6 128 aaKnown RBP3.79□□□□□ -1.8
SCN1A-220ENST00000641603 GPHA2Q96T91 129 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 SPTBN1Q01082 2364 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms