RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TRAV9-1A0A075B6T8 112 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 IZUMO1RA6ND01 250 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 CHAC1Q9BUX1 264 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 A0A1B0GTI1 187 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 MYMXA0A1B0GTQ4 84 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 CCL24O00175 119 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF114Q8NC26 417 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 IL36BQ9NZH7 164 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 CFHR3Q02985 330 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 PSG3Q16557 428 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 EPDR1Q9UM22 224 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 PSG8Q9UQ74 426 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 IGHV3-64A0A075B6Q5 118 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 IGLV3-32A0A0A0MS00 114 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 C5orf66Q9H5L9 145 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 XCL2Q9UBD3 114 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TET2Q6N021 2002 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 A8MWV9 139 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 SSBP2P81877 361 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 KLF5Q13887 457 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TCTEX1D4Q5JR98 221 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF503Q96F45 646 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 IGF2BP2-AS1Q96M15 143 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 SMIM2Q9BVW6 85 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 SLC25A39Q9BZJ4 359 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TNRC6AQ8NDV7 1962 aaKnown RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 HLA-DQB1P01920 261 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 RUSC1-AS1Q66K80 236 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF562Q6V9R5 426 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 A0A0U1RRA0 63 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 IRF3Q14653 427 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TAL2Q16559 108 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 CD300EQ496F6 205 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 FAM219BQ5XKK7 198 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 Q6ZWC4 215 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TRGV9Q99603 122 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TRBV5-7A0A0A0MS05 114 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 MMP23AO75900 390 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 PFN1P07737 140 aaKnown RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 RFNGQ9Y644 331 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 SRRM5B3KS81 715 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 NDUFB8O95169 186 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 PRTN3P24158 256 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 GFI1BQ5VTD9 330 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TRPT1Q86TN4 253 aaKnown RBP5.03□□□□□ -1.6
SCN1A-217ENST00000637988 TRAV13-1A0A0B4J241 112 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 VPREB3Q9UKI3 123 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 MED13LQ71F56 2210 aa5.03□□□□□ -1.6
SCN1A-217ENST00000637988 A0A1B0GWJ7 208 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 ANGP03950 147 aaKnown RBP5.02□□□□□ -1.61
SCN1A-217ENST00000637988 RNF183Q96D59 192 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 WBP1Q96G27 269 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 SIGLEC9Q9Y336 463 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 MUC6Q6W4X9 2439 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 TRAV8-2A0A0B4J237 113 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 NPIPB5A8MRT5 1133 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 E7EQL1 145 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 TMEM243Q9BU79 118 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 C1orf43Q9BWL3 253 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 DPRXA6NFQ7 191 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 COL8A2P25067 703 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 MIR17HGQ75NE6 70 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 LSM4Q9Y4Z0 139 aaKnown RBP5.02□□□□□ -1.61
SCN1A-217ENST00000637988 SPCS1Q9Y6A9 102 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 SMIM6P0DI80 62 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 TFF3Q07654 80 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 TMEM249Q2WGJ8 235 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 XAF1Q6GPH4 301 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 MDS2Q8NDY4 140 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 IGKV2-40A0A087WW87 121 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-217ENST00000637988 IGKV2D-40P01614 121 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-217ENST00000637988 IGKCP01834 107 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 IGFL3Q6UXB1 125 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 DEPPQ9NTK1 212 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 TRAV8-4A0A0B4J246 113 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 SCO2A0A1W2PP80 73 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 HIST1H4AP62805 103 aaKnown RBP5.02□□□□□ -1.61
SCN1A-217ENST00000637988 KLF17Q5JT82 389 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-217ENST00000637988 NCOA6Q14686 2063 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-217ENST00000637988 RAMP3O60896 148 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 C1QL4Q86Z23 238 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 TMEM14BQ9NUH8 114 aa5.02□□□□□ -1.61
SCN1A-217ENST00000637988 DUTP33316 252 aaKnown RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 GAS1P54826 345 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 TIRAPP58753 221 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 ZNF474Q6S9Z5 364 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 PRIMA1Q86XR5 153 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 ZNF48Q96MX3 618 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 ERG28Q9UKR5 140 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 LTBP1Q14766 1721 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 PMS2P5A8MQ11 134 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 DANCRP0C864 163 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 FOXA3P55318 350 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 RPL18AQ02543 176 aaKnown RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 A0A1B0GVG6 124 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 ZNF250P15622 560 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 DSCR8Q96T75 97 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 SMPXQ9UHP9 88 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 KIAA1549Q9HCM3 1950 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 IGKV1OR2-108A0A075B7D4 117 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms