RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 A0A1B0GV50 99 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 C9orf170A2RU37 121 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 C17orf112F2Z3M2 114 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 CSTAP01040 98 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 IGHV3-30P01768 117 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 ORM1P02763 201 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 IGHV3-30-5P0DP03 117 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 CCL2P13500 99 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 KDELR2P33947 212 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 SPRR1AP35321 89 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 FOXI2Q6ZQN5 318 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 BOD1L2Q8IYS8 172 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 SPANXB1Q9NS25 103 aaPredicted RBP-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 C3orf18Q9UK00 162 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 USP9YO00507 2555 aaPredicted RBP-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 CHD8Q9HCK8 2581 aa-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 SPTA1P02549 2419 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 COL24A1Q17RW2 1714 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 STARD9Q9P2P6 4700 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 TRAV27A0A087WT01 109 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 F2Z2F3 143 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 MKRN2OSH3BPM6 223 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 RD3LP0DJH9 198 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 UCHL3P15374 230 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 ANGPT1Q15389 498 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 KRTAP6-2Q3LI66 62 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 TMEM14EPQ6UXP3 125 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 S100A7AQ86SG5 101 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 FUNDC1Q8IVP5 155 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 PDZD9Q8IXQ8 264 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 PRTFDC1Q9NRG1 225 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 C15orf41Q9Y2V0 281 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 BIVM-ERCC5R4GMW8 1640 aa-1.99□□□□□ -2.73
SCN1A-215ENST00000637285 LOC101927531A0A1B0GV80 90 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 EVPLLA8MZ36 301 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 LOC730098B7Z3J9 87 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 BRI3O95415 125 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 HLA-DRB1P01911 266 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 SERPINE1P05121 402 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 SPRR2AP35326 72 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 CD302Q8IX05 232 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 POP5Q969H6 163 aaKnown RBP-2□□□□□ -2.73
SCN1A-215ENST00000637285 UPF3BQ9BZI7 483 aaKnown RBP-2□□□□□ -2.73
SCN1A-215ENST00000637285 CTTNBP2Q8WZ74 1663 aa-2□□□□□ -2.73
SCN1A-215ENST00000637285 EPPK1P58107 5090 aaKnown RBP-2□□□□□ -2.73
SCN1A-215ENST00000637285 HECW1Q76N89 1606 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 MCRIP1C9JLW8 97 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 BIRC5O15392 142 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 NDUFB3O43676 98 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 IGLV1-51P01701 117 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 C1orf195Q5TG92 126 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 CST9Q5W186 159 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 CCL4L1Q8NHW4 92 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 ISOC1Q96CN7 298 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 PRO0255Q9UI72 69 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 FBXO5Q9UKT4 447 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 ARL5AQ9Y689 179 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 TMEM56-RWDD3S4R434 201 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 DSPPQ9NZW4 1301 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 MYLKQ15746 1914 aa-2.01□□□□□ -2.73
SCN1A-215ENST00000637285 LCN1P31025 176 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 DEFA1P59665 94 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 EIF5AP63241 154 aaKnown RBP-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 MIR22HGQ0VDD5 57 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 KLKP1Q107X0 134 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 Q5XG85 94 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 SMIM19Q96E16 107 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 C19orf60Q96EN9 201 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 DSCR8Q96T75 97 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 UCK1Q9HA47 277 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 POPDC3Q9HBV1 291 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 NAT8BQ9UHF3 227 aa-2.02□□□□□ -2.73
SCN1A-215ENST00000637285 ATRQ13535 2644 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 TRGV10A0A0A0MS01 117 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 SLC16A4O15374 487 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 TGOLN2O43493 480 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 HPGDSO60760 199 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 OR10J4P0C629 311 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 SPRR2EP22531 72 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 SNRPD3P62318 126 aaKnown RBP-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 PMAIP1Q13794 54 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 ANKRD29Q8N6D5 301 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 FAM172AQ8WUF8 416 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 KCTD7Q96MP8 289 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 ZNF714Q96N38 554 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 TMEM126AQ9H061 195 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 MAP1LC3AQ9H492 121 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 BIN3Q9NQY0 253 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 PLXND1Q9Y4D7 1925 aa-2.03□□□□□ -2.73
SCN1A-215ENST00000637285 SMLR1H3BR10 107 aa-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 K7EQZ3 153 aa-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 CXCR6O00574 342 aa-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 CRYZL1O95825 349 aa-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 SMIM10L2AP0DMW4 78 aa-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 SMIM10L2BP0DMW5 78 aa-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 RPL12P30050 165 aaKnown RBP-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 SRP14P37108 136 aaKnown RBP-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 RAB5CP51148 216 aa-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 RPS20P60866 119 aaKnown RBP-2.04□□□□□ -2.74
SCN1A-215ENST00000637285 RAB5BP61020 215 aa-2.04□□□□□ -2.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms