RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 MGST1P10620 155 aaKnown RBP12.73□□□□□ -0.37
LDB3-208ENST00000623007 C9orf152Q5JTZ5 239 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 LEMD1Q68G75 181 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 TMEM75Q8N9X5 138 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 ZNF414Q96IQ9 312 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 CLEC5AQ9NY25 188 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 DCHS2Q6V1P9 2916 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 UBR5O95071 2799 aaPredicted RBP12.73□□□□□ -0.37
LDB3-208ENST00000623007 AVPP01185 164 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 FSHBP01225 129 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 TRGV3P03979 118 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 TRGC2P03986 189 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 S100A8P05109 93 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 ADMP35318 185 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 OR8I2Q8N0Y5 310 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 METTL26Q96S19 204 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 AURKAIP1Q9NWT8 199 aaPredicted RBP12.73□□□□□ -0.37
LDB3-208ENST00000623007 ZFP30Q9Y2G7 519 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 V9GYV3 84 aa12.73□□□□□ -0.37
LDB3-208ENST00000623007 AKAP6Q13023 2319 aa12.72□□□□□ -0.37
LDB3-208ENST00000623007 LTAP01374 205 aa12.72□□□□□ -0.37
LDB3-208ENST00000623007 PPIFP30405 207 aaKnown RBP12.72□□□□□ -0.37
LDB3-208ENST00000623007 LY6EQ16553 131 aa12.72□□□□□ -0.37
LDB3-208ENST00000623007 SIGLEC15Q6ZMC9 328 aa12.72□□□□□ -0.37
LDB3-208ENST00000623007 CCDC140Q96MF4 163 aa12.72□□□□□ -0.37
LDB3-208ENST00000623007 ZNF492Q9P255 531 aa12.72□□□□□ -0.37
LDB3-208ENST00000623007 ZNF320A2RRD8 509 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 IER3P46695 156 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 CT83Q5H943 113 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 WDR73Q6P4I2 378 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 RASL11AQ6T310 242 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 TOMM20LQ6UXN7 152 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 ZFAND3Q9H8U3 227 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 S4R3C0 116 aa12.71□□□□□ -0.37
LDB3-208ENST00000623007 TENM4Q6N022 2769 aa12.71□□□□□ -0.38
LDB3-208ENST00000623007 A0A087X0K7 114 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 LINC01548A6NM66 108 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 MT-ND6P03923 174 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 HNF1AP20823 631 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 TPPP2P59282 170 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 SNRPEP62304 92 aaKnown RBP12.7□□□□□ -0.38
LDB3-208ENST00000623007 CLEC19AQ6UXS0 136 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 TMEM183AQ8IXX5 376 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 MLST8Q9BVC4 326 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 PRDM13Q9H4Q3 707 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 GNB4Q9HAV0 340 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 MYO18BQ8IUG5 2567 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 SPTAN1Q13813 2472 aaKnown RBP12.7□□□□□ -0.38
LDB3-208ENST00000623007 ZNF705GA8MUZ8 300 aaPredicted RBP12.7□□□□□ -0.38
LDB3-208ENST00000623007 GATCO43716 136 aaKnown RBP12.7□□□□□ -0.38
LDB3-208ENST00000623007 IGHV3-23P01764 117 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 KRTAP10-9P60411 292 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 DEFB112Q30KQ8 113 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 ACTL10Q5JWF8 245 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 Q96MF0 132 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 SLC50A1Q9BRV3 221 aa12.7□□□□□ -0.38
LDB3-208ENST00000623007 NDUFA4O00483 81 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BKO60814 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 IGLV1-40P01703 118 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BJP06899 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BOP23527 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 COL8A1P27658 744 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BBP33778 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BDP58876 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BCP62807 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST2H2BEQ16778 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.69□□□□□ -0.38
LDB3-208ENST00000623007 Q6YL49 198 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 OR4B1Q8NGF8 309 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BHQ93079 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 DAZAP1Q96EP5 407 aaKnown RBP12.69□□□□□ -0.38
LDB3-208ENST00000623007 GRAMD2BQ96HH9 432 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 MS4A10Q96PG2 267 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 PSMG3-AS1Q96PY0 264 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BNQ99877 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 HIST1H2BMQ99879 126 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 VPREB3Q9UKI3 123 aa12.69□□□□□ -0.38
LDB3-208ENST00000623007 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.69□□□□□ -0.38
LDB3-208ENST00000623007 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.68□□□□□ -0.38
LDB3-208ENST00000623007 SMIM27A0A1W2PRY6 76 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 FAM231BA6NCW3 169 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 BUB3O43684 328 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 ARL3P36405 182 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 GNG5P63218 68 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 FABP9Q0Z7S8 132 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 OR5I1Q13606 314 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 MED13LQ71F56 2210 aa12.68□□□□□ -0.38
LDB3-208ENST00000623007 TRGC1P0CF51 173 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 HOXA5P20719 270 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 Q86TA4 180 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 LINC00479Q96M42 142 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 GFRA4Q9GZZ7 299 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 SERTAD4Q9NUC0 356 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 TRAPPC1Q9Y5R8 145 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 SOX21Q9Y651 276 aaPredicted RBP12.67□□□□□ -0.38
LDB3-208ENST00000623007 A0A1W2PS18 150 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 SH2D7A6NKC9 451 aaPredicted RBP12.67□□□□□ -0.38
LDB3-208ENST00000623007 DIRC3C9JPN6 131 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 PHOX2AO14813 284 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 CDX1P47902 265 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms