RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	12.23	□□□□□ -0.45	2e-7	■■■■■ 33
DDX39A-209	ENST00000589318	CSMD1	Q96PZ7	3565 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	TMEM238L	A0A1B0GVL6	79 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	MSMB	P08118	114 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	TNXA	Q16473	311 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	FAM162B	Q5T6X4	162 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	RASL11A	Q6T310	242 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	RNF114	Q9Y508	228 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	NPFF	O15130	113 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	NBR2	O15453	112 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	PMCH	P20382	165 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	RPL27A	P46776	148 aa	Known RBP	12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	ERH	P84090	104 aa	Known RBP	12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	C12orf54	Q6X4T0	127 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	TCF24	Q7RTU0	167 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	DERL1	Q9BUN8	251 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	ST20	Q9HBF5	79 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	LSM4	Q9Y4Z0	139 aa	Known RBP	12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	ZFHX3	Q15911	3703 aa		12.22	□□□□□ -0.45
DDX39A-209	ENST00000589318	TRBV20OR9-2	A0A075B6H5	130 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	TRAV34	A0A0B4J273	112 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	TEX22	C9J3V5	150 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318		F2Z2F3	143 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	AMY1A	P04745	511 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	STAG3L2	P0CL84	134 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	STAG3L3	P0CL85	134 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	AREG	P15514	252 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	TMEM136	Q6ZRR5	245 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	BEX4	Q9NWD9	120 aa	Predicted RBP	12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	C1RL	Q9NZP8	487 aa		12.21	□□□□□ -0.45
DDX39A-209	ENST00000589318	NAV2	Q8IVL1	2488 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	FNDC10	F2Z333	226 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318		M0QZ24	198 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	NBEAP1	P0C6P0	100 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	OPRK1	P41145	380 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	DEFB113	Q30KQ7	82 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	HIST2H2BC	Q6DN03	193 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	DEFB125	Q8N687	156 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	TSKU	Q8WUA8	353 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318	OSTC	Q9NRP0	149 aa		12.21	□□□□□ -0.46
DDX39A-209	ENST00000589318		B4DSR2	109 aa		12.2	□□□□□ -0.46
DDX39A-209	ENST00000589318	ACTL6B	O94805	426 aa		12.2	□□□□□ -0.46
DDX39A-209	ENST00000589318	HES1	Q14469	280 aa		12.2	□□□□□ -0.46
DDX39A-209	ENST00000589318	PVRIG	Q6DKI7	326 aa		12.2	□□□□□ -0.46
DDX39A-209	ENST00000589318	MGST2	Q99735	147 aa		12.2	□□□□□ -0.46
DDX39A-209	ENST00000589318		V9GYV3	84 aa		12.2	□□□□□ -0.46
DDX39A-209	ENST00000589318	CR1	P17927	2039 aa		12.2	□□□□□ -0.46
DDX39A-209	ENST00000589318	IGHV1-69D	A0A0B4J2H0	117 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	IGHV1-69	P01742	117 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	MLANA	Q16655	118 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	C5orf64	Q2M2E5	130 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	FAM120AOS	Q5T036	256 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	RUSC1-AS1	Q66K80	236 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	LRRC75A-AS1	Q8N1F1	130 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	SRSF12	Q8WXF0	261 aa	Known RBP	12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	NPVF	Q9HCQ7	196 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	TRAV40	A0A0B4J280	105 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	TAX1BP3	O14907	124 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	MFAP2	P55001	183 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	CD69	Q07108	199 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	PLGLA	Q15195	96 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	GGTLC1	Q9BX51	225 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	WNT10A	Q9GZT5	417 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	RPH3AL	Q9UNE2	315 aa		12.19	□□□□□ -0.46
DDX39A-209	ENST00000589318	IGHV3OR16-10	A0A075B7F0	116 aa		12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	SCO2	A0A1W2PP80	73 aa		12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	PGPEP1L	A6NFU8	196 aa		12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	CD5L	O43866	347 aa		12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	OR8I2	Q8N0Y5	310 aa		12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	WIPF2	Q8TF74	440 aa	Predicted RBP	12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	FNDC4	Q9H6D8	234 aa	Predicted RBP	12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	HIF1AN	Q9NWT6	349 aa		12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	ZAN	Q9Y493	2812 aa		12.18	□□□□□ -0.46
DDX39A-209	ENST00000589318	IGKV1OR2-108	A0A075B7D4	117 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318		K7EN84	100 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	HLA-DRB1	P01911	266 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	APELA	P0DMC3	54 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	IGHV4-38-2	P0DP08	117 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	SRI	P30626	198 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	UBE2G1	P62253	170 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	KLF5	Q13887	457 aa	Predicted RBP	12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	KRTAP1-3	Q8IUG1	177 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	PEF1	Q9UBV8	284 aa	Known RBP	12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	ABCA1	O95477	2261 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	CORT	O00230	105 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	BMPR1B	O00238	502 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	SLC17A3	O00476	420 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	AVP	P01185	164 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	APCS	P02743	223 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	PSG1	P11464	419 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	TEPP	Q6URK8	271 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	BRD3OS	Q6XYD6	125 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	CACNG8	Q8WXS5	425 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	C7orf69	Q9H7B7	122 aa		12.17	□□□□□ -0.46
DDX39A-209	ENST00000589318	FAM181B	A6NEQ2	426 aa		12.16	□□□□□ -0.46
DDX39A-209	ENST00000589318	ARL14EPL	P0DKL9	152 aa		12.16	□□□□□ -0.46
DDX39A-209	ENST00000589318	SUB1	P53999	127 aa	Known RBP eCLIP	12.16	□□□□□ -0.46
DDX39A-209	ENST00000589318	LOXL1	Q08397	574 aa	Predicted RBP	12.16	□□□□□ -0.46
DDX39A-209	ENST00000589318	MBD6	Q96DN6	1003 aa		12.16	□□□□□ -0.46
DDX39A-209	ENST00000589318	RCHY1	Q96PM5	261 aa		12.16	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms