RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 LSM2Q9Y333 95 aaKnown RBP10.42□□□□□ -0.74
VPS53-218ENST00000575207 A0A0D9SG52 128 aa10.41□□□□□ -0.74
VPS53-218ENST00000575207 C9JCJ5 164 aa10.41□□□□□ -0.74
VPS53-218ENST00000575207 PSMA1P25786 263 aaKnown RBP10.41□□□□□ -0.74
VPS53-218ENST00000575207 TAS2R20P59543 309 aa10.41□□□□□ -0.74
VPS53-218ENST00000575207 LAGE3Q14657 143 aa10.41□□□□□ -0.74
VPS53-218ENST00000575207 C2orf83Q53S99 150 aa10.41□□□□□ -0.74
VPS53-218ENST00000575207 DHRS11Q6UWP2 260 aa10.41□□□□□ -0.74
VPS53-218ENST00000575207 EHFQ9NZC4 300 aa10.41□□□□□ -0.74
VPS53-218ENST00000575207 RNF222A6NCQ9 220 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 E5RGE8 158 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 S100GP29377 79 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 FABP5Q01469 135 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 GFI1BQ5VTD9 330 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 TBC1D26Q86UD7 250 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 Q8N976 141 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 PCNPQ8WW12 178 aaKnown RBP10.4□□□□□ -0.74
VPS53-218ENST00000575207 SLC25A22Q9H936 323 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 GSN-AS1Q9NRJ2 163 aa10.4□□□□□ -0.74
VPS53-218ENST00000575207 IGKV1-5P01602 117 aa10.39□□□□□ -0.75
VPS53-218ENST00000575207 ZNF90Q03938 601 aa10.39□□□□□ -0.75
VPS53-218ENST00000575207 THAP8Q8NA92 274 aa10.39□□□□□ -0.75
VPS53-218ENST00000575207 BAALCQ8WXS3 180 aa10.39□□□□□ -0.75
VPS53-218ENST00000575207 MRPL32Q9BYC8 188 aaKnown RBP10.39□□□□□ -0.75
VPS53-218ENST00000575207 FXYD6Q9H0Q3 95 aa10.39□□□□□ -0.75
VPS53-218ENST00000575207 KRTAP9-7A8MTY7 169 aa10.38□□□□□ -0.75
VPS53-218ENST00000575207 AKR1C2P52895 323 aa10.38□□□□□ -0.75
VPS53-218ENST00000575207 FHL2Q14192 279 aa10.38□□□□□ -0.75
VPS53-218ENST00000575207 BLNKQ8WV28 456 aa10.38□□□□□ -0.75
VPS53-218ENST00000575207 RPH3ALQ9UNE2 315 aa10.38□□□□□ -0.75
VPS53-218ENST00000575207 ZFP92A6NM28 416 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 SNRPGP15A8MWD9 76 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 FGL1Q08830 312 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 C11orf72Q8NBR9 251 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 ZNF680Q8NEM1 530 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 OR1B1Q8NGR6 318 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 VGLL1Q99990 258 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 TXNDC17Q9BRA2 123 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 PYGO2Q9BRQ0 406 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 HEYLQ9NQ87 328 aaPredicted RBP10.37□□□□□ -0.75
VPS53-218ENST00000575207 FKBP14Q9NWM8 211 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 BOLA1Q9Y3E2 137 aa10.37□□□□□ -0.75
VPS53-218ENST00000575207 TRAV1-2A0A0B4J238 106 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 SPINK4O60575 86 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 RAB3BP20337 219 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 GATA2P23769 480 aaPredicted RBP10.36□□□□□ -0.75
VPS53-218ENST00000575207 RFX2P48378 723 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 KLF9Q13886 244 aaPredicted RBP10.36□□□□□ -0.75
VPS53-218ENST00000575207 LAIR2Q6ISS4 152 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 ARRDC1Q8N5I2 433 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 OR4D5Q8NGN0 318 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 TMEM170AQ8WVE7 144 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 PARD6GQ9BYG4 376 aaPredicted RBP10.36□□□□□ -0.75
VPS53-218ENST00000575207 ACOT13Q9NPJ3 140 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 DIABLOQ9NR28 239 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 PLCXD1Q9NUJ7 323 aa10.36□□□□□ -0.75
VPS53-218ENST00000575207 IGHV3-30P01768 117 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 IGHV3-33P01772 117 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 ORM1P02763 201 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 FABP1P07148 127 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 IGHV3-30-3P0DP02 117 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 IGHV3-30-5P0DP03 117 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 TIRAPP58753 221 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 FFAR4Q5NUL3 377 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 CYGBQ8WWM9 190 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 GPR82Q96P67 336 aa10.35□□□□□ -0.75
VPS53-218ENST00000575207 IGKV1D-37A0A075B6S9 117 aa10.34□□□□□ -0.75
VPS53-218ENST00000575207 TRAV18A0A075B6X5 111 aa10.34□□□□□ -0.75
VPS53-218ENST00000575207 SPCS3P61009 180 aa10.34□□□□□ -0.75
VPS53-218ENST00000575207 TRAV12-3A0A0B4J271 114 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 TRGV4A0A0C4DH28 118 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 CXCL3P19876 107 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 MYL9P24844 172 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 ZNF846Q147U1 533 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 LPCAT3Q6P1A2 487 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 WDR73Q6P4I2 378 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 CCDC190Q86UF4 302 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 SLC25A31Q9H0C2 315 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 KLF12Q9Y4X4 402 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 TMEM56-RWDD3S4R434 201 aa10.33□□□□□ -0.76
VPS53-218ENST00000575207 TRAV8-6A0A0B4J262 113 aa10.32□□□□□ -0.76
VPS53-218ENST00000575207 ATG12O94817 140 aa10.32□□□□□ -0.76
VPS53-218ENST00000575207 PPT1P50897 306 aa10.32□□□□□ -0.76
VPS53-218ENST00000575207 RPUSD4Q96CM3 377 aaKnown RBP10.32□□□□□ -0.76
VPS53-218ENST00000575207 TRAV8-3A0A0A6YYJ7 113 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 MEIS3P1A6NDR6 274 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 J3KRW8 73 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 CIB2O75838 187 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 PMP2P02689 132 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 STEAP1BQ6NZ63 245 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 ZFP1Q6P2D0 407 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 NOXA1Q86UR1 476 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 IFT46Q9NQC8 304 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 MRPL16Q9NX20 251 aaKnown RBP10.31□□□□□ -0.76
VPS53-218ENST00000575207 RHBDL2Q9NX52 303 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 SLC45A2Q9UMX9 530 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 COX11Q9Y6N1 276 aa10.31□□□□□ -0.76
VPS53-218ENST00000575207 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.31□□□□□ -0.76
VPS53-218ENST00000575207 SMIM30A4D0T7 59 aa10.3□□□□□ -0.76
VPS53-218ENST00000575207 TCL1AP56279 114 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms