RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ARHGAP5-AS1Q96IT6 56 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 YPEL2Q96QA6 119 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 OCR1Q9BZK8 76 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 ALX4Q9H161 411 aaPredicted RBP4.56□□□□□ -1.68
VPS53-212ENST00000572259 ATG5Q9H1Y0 275 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 DCSTAMPQ9H295 470 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 PARLQ9H300 379 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 ZNF696Q9H7X3 374 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 SPANXA1Q9NS26 97 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 ZNF581Q9P0T4 197 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 HSPB11Q9Y547 144 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 TMEM56-RWDD3S4R434 201 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 MGAM2Q2M2H8 2515 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 IGHV1-3A0A0C4DH29 117 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 S1PR2O95136 353 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 NAPSAO96009 420 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 IGLV2-11P01706 119 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 SDC2P34741 201 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 SERPINB10P48595 397 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 NDUFV3P56181 108 aaKnown RBP4.55□□□□□ -1.68
VPS53-212ENST00000572259 HERPUD1Q15011 391 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 HMGN3Q15651 99 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 LDLRAD2Q5SZI1 272 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 LCE1AQ5T7P2 110 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 LYG1Q8N1E2 194 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 FAM71E2Q8N5Q1 922 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 DRAM1Q8N682 238 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 UBAC2Q8NBM4 344 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 OR10J6PQ8NGY7 276 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 OR1L1Q8NH94 360 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 MCFD2Q8NI22 146 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 UBALD1Q8TB05 177 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 SRSF12Q8WXF0 261 aaKnown RBP4.55□□□□□ -1.68
VPS53-212ENST00000572259 PRAC1Q96KF2 57 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 TSC22D3Q99576 134 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 SLC25A39Q9BZJ4 359 aaPredicted RBP4.55□□□□□ -1.68
VPS53-212ENST00000572259 SLIRPQ9GZT3 109 aaKnown RBP4.55□□□□□ -1.68
VPS53-212ENST00000572259 OR51E2Q9H255 320 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 MTFP1Q9UDX5 166 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 AK3Q9UIJ7 227 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 MOB4Q9Y3A3 225 aa4.55□□□□□ -1.68
VPS53-212ENST00000572259 TEX50A0A1B0GTY4 177 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 RBFOX3A6NFN3 312 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 IFITM10A6NMD0 228 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 GPR31O00270 319 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 IGKV1D-33P01593 117 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 IGKV1-33P01594 117 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 CD24P25063 80 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 PPP1CCP36873 323 aaKnown RBP4.54□□□□□ -1.68
VPS53-212ENST00000572259 ZNF137PP52743 207 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 BLCAPP62952 87 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 HLA-DRB3P79483 266 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 EBI3Q14213 229 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 CDK10Q15131 360 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 ACOT6Q3I5F7 207 aaPredicted RBP4.54□□□□□ -1.68
VPS53-212ENST00000572259 ABCA11PQ4W5N1 156 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 FAM162BQ5T6X4 162 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 ZNF880Q6PDB4 577 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 Q6ZRP5 223 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 Q8N2B8 174 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 OR1N2Q8NGR9 330 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 RTN4IP1Q8WWV3 396 aaPredicted RBP4.54□□□□□ -1.68
VPS53-212ENST00000572259 GALNT14Q96FL9 552 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 S100A16Q96FQ6 103 aaKnown RBP4.54□□□□□ -1.68
VPS53-212ENST00000572259 GINS4Q9BRT9 223 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 GNB4Q9HAV0 340 aa4.54□□□□□ -1.68
VPS53-212ENST00000572259 RBM7Q9Y580 266 aaKnown RBP4.54□□□□□ -1.68
VPS53-212ENST00000572259 TNCP24821 2201 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 TRAV9-2A0A087WT02 112 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 IGHV7-81A0A0B4J1V7 117 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 TRAV8-2A0A0B4J237 113 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 TRAV8-6A0A0B4J262 113 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 SMIM31A0A1B0GVY4 71 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 SMIM1B2RUZ4 78 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 H0Y9J4 135 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 ATG12O94817 140 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 CRYGDP07320 174 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 OR5G3P0C626 314 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 OR13C7P0DN81 318 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 HIST1H1DP16402 221 aaKnown RBP4.53□□□□□ -1.68
VPS53-212ENST00000572259 S100GP29377 79 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 LGALS7P47929 136 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 REG1BP48304 166 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 GNG2P59768 71 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 CACNG7P62955 275 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 ZNF45Q02386 682 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 TEX43Q6ZNM6 134 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 C1orf158Q8N1D5 194 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 SMIM20Q8N5G0 67 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 ZNF439Q8NDP4 499 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 OR4X2Q8NGF9 303 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 OR1S1Q8NH92 325 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 OR13C6PQ8NH95 151 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 METTL26Q96S19 204 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 RNF5Q99942 180 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 ZNF702PQ9H963 129 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 ENY2Q9NPA8 101 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 NUBP2Q9Y5Y2 271 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 TRRAPQ9Y4A5 3859 aa4.53□□□□□ -1.68
VPS53-212ENST00000572259 IGHV3-72A0A0B4J1Y9 119 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms