RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SH2D7A6NKC9 451 aaPredicted RBP15.85■□□□□ 0.13
CLN3-230ENST00000568076 MT-ND6P03923 174 aa15.85■□□□□ 0.13
CLN3-230ENST00000568076 AMY1AP04745 511 aa15.85■□□□□ 0.13
CLN3-230ENST00000568076 CTSGP08311 255 aa15.85■□□□□ 0.13
CLN3-230ENST00000568076 CRISP2P16562 243 aa15.85■□□□□ 0.13
CLN3-230ENST00000568076 RPL19P84098 196 aaKnown RBP15.85■□□□□ 0.13
CLN3-230ENST00000568076 IGHV3OR16-10A0A075B7F0 116 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 LINC01548A6NM66 108 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 ECSCRQ19T08 205 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 GOLT1AQ6ZVE7 132 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 Q86TA4 180 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 NUP35Q8NFH5 326 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 FAM110DQ8TAY7 271 aaPredicted RBP15.84■□□□□ 0.13
CLN3-230ENST00000568076 ZNF414Q96IQ9 312 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 CHRDL1Q9BU40 450 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 TMUB1Q9BVT8 246 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 C19orf71A6NCJ1 209 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 VWC2LB2RUY7 222 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 F2Z2F3 143 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 GOSR1O95249 250 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 COX19Q49B96 90 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 UNQ5815/PRO19632Q6UWF5 114 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 CMTM2Q8TAZ6 248 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 TSKUQ8WUA8 353 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 NEU1Q99519 415 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 PRSS22Q9GZN4 317 aa15.84■□□□□ 0.13
CLN3-230ENST00000568076 KIAA1644Q3SXP7 199 aa15.83■□□□□ 0.12
CLN3-230ENST00000568076 OR5R1Q8NH85 324 aa15.83■□□□□ 0.12
CLN3-230ENST00000568076 RNF24Q9Y225 148 aa15.83■□□□□ 0.12
CLN3-230ENST00000568076 ACACBO00763 2458 aa15.83■□□□□ 0.12
CLN3-230ENST00000568076 DOPEY1Q5JWR5 2465 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 PRB4P10163 310 aaPredicted RBP15.82■□□□□ 0.12
CLN3-230ENST00000568076 RAB4BP61018 213 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 KLK9Q2XQG4 91 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 ZNF492Q9P255 531 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 KLK9Q9UKQ9 250 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 HIGD1CA8MV81 97 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 Q0VG73 95 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 LYPD1Q8N2G4 141 aa15.82■□□□□ 0.12
CLN3-230ENST00000568076 USP9XQ93008 2570 aaPredicted RBP15.81■□□□□ 0.12
CLN3-230ENST00000568076 ZFHX3Q15911 3703 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 G3V318 75 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 SERF1AO75920 110 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 HLA-DQA1P01909 254 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 GDF5OSQ5U4N7 250 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 PRNTQ86SH4 94 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 CIARTQ8N365 385 aaPredicted RBP15.81■□□□□ 0.12
CLN3-230ENST00000568076 C5orf56Q8N8D9 126 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 VN1R17PQ8TDU5 208 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 WIPF2Q8TF74 440 aaPredicted RBP15.81■□□□□ 0.12
CLN3-230ENST00000568076 TXN2Q99757 166 aa15.81■□□□□ 0.12
CLN3-230ENST00000568076 RPP21Q9H633 154 aaKnown RBP15.81■□□□□ 0.12
CLN3-230ENST00000568076 IGHV4-30-2A0A087WSY4 118 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 BMPR1BO00238 502 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 ESDP10768 282 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 C15orf32Q32M92 178 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 ZNF502Q8TBZ5 544 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 GNB4Q9HAV0 340 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 ZNF331Q9NQX6 463 aaPredicted RBP15.8■□□□□ 0.12
CLN3-230ENST00000568076 IGHV1-69DA0A0B4J2H0 117 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 ZNF785A8K8V0 405 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 IGHV1-69P01742 117 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 ATP5J2P56134 94 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 BRD3OSQ6XYD6 125 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 TMEM219Q86XT9 240 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 PIFOQ8TCI5 191 aa15.8■□□□□ 0.12
CLN3-230ENST00000568076 TRAV40A0A0B4J280 105 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 TRBV6-1A0A0K0K1D8 114 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 M0R3E3 92 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 NDUFS8O00217 210 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 RHOGP84095 191 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 SLAQ13239 276 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 RASL11AQ6T310 242 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 TCF24Q7RTU0 167 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 S100A7AQ86SG5 101 aa15.79■□□□□ 0.12
CLN3-230ENST00000568076 P01737 135 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 CTAG1AP78358 180 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 CLEC2AQ6UVW9 174 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 TMEM75Q8N9X5 138 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 ASCL2Q99929 193 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 CELSR1Q9NYQ6 3014 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 IGHV3-35A0A0C4DH35 117 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 APCSP02743 223 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 GPR183P32249 361 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 PDE6HQ13956 83 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 CT83Q5H943 113 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 BAGE3Q86Y29 109 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 GTSF1Q8WW33 167 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 TMEM190Q8WZ59 177 aa15.78■□□□□ 0.12
CLN3-230ENST00000568076 IGHV3OR16-8A0A075B7F1 116 aa15.77■□□□□ 0.12
CLN3-230ENST00000568076 DIRC3C9JPN6 131 aa15.77■□□□□ 0.12
CLN3-230ENST00000568076 NPIPB6E9PJ23 425 aa15.77■□□□□ 0.12
CLN3-230ENST00000568076 A0A1B0GXF2 115 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 PRB1P04280 392 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 SRIP30626 198 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 C9orf152Q5JTZ5 239 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 A8MWL6 223 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 SCGB2A1O75556 95 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 CLEC3BP05452 202 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 IGHV4-38-2P0DP08 117 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms