RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 APOHP02749 345 aaPredicted RBP8.74□□□□□ -1.01
USP3-206ENST00000558157 ADORA2A-AS1P86434 159 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 POU2AF1Q16633 256 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 ZNF418Q8TF45 676 aaPredicted RBP8.74□□□□□ -1.01
USP3-206ENST00000558157 DAZAP1Q96EP5 407 aaKnown RBP8.74□□□□□ -1.01
USP3-206ENST00000558157 PGLYRP4Q96LB8 373 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 PRNDQ9UKY0 176 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 EPDR1Q9UM22 224 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 SMG1Q96Q15 3661 aaKnown RBP8.74□□□□□ -1.01
USP3-206ENST00000558157 SERTM2A0A1B0GWG4 89 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 C3orf80F5H4A9 247 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 C15orf65H3BRN8 121 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 FCGR2BP31994 310 aaPredicted RBP8.74□□□□□ -1.01
USP3-206ENST00000558157 FAM53AQ6NSI3 398 aaPredicted RBP8.74□□□□□ -1.01
USP3-206ENST00000558157 TTC9CQ8N5M4 171 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 TMEM190Q8WZ59 177 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 PLPPR2Q96GM1 343 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 PCNX1Q96RV3 2341 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 A0A1W2PRD5 423 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 A0A1W2PRF3 423 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 A0A1W2PRM7 423 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 FAM90A27PA6NNH2 459 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 SHISA9B4DS77 424 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 M0R1B8 84 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 NCR2O95944 276 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 SLC25A48Q6ZT89 311 aaKnown RBP8.73□□□□□ -1.01
USP3-206ENST00000558157 C22orf34Q6ZV56 151 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 VKORC1L1Q8N0U8 176 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 OR5AN1Q8NGI8 311 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 OR1L8Q8NGR8 309 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 DDB2Q92466 427 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 DIDO1Q9BTC0 2240 aaKnown RBP8.73□□□□□ -1.01
USP3-206ENST00000558157 E9PLD3 99 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 C16orf97H3BN30 126 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 LTAP01374 205 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 PRCDQ00LT1 54 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 SRSF1Q07955 248 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP3-206ENST00000558157 TMEM177Q53S58 311 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 FAM169BQ8N8A8 192 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 PRSS3P2Q8NHM4 247 aa8.73□□□□□ -1.01
USP3-206ENST00000558157 SPAG8Q99932 426 aaPredicted RBP8.73□□□□□ -1.01
USP3-206ENST00000558157 CACNA1BQ00975 2339 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 COL8A2P25067 703 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 ZNF138P52744 262 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 FAM90A1Q86YD7 464 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.72□□□□□ -1.01
USP3-206ENST00000558157 OR13A1Q8NGR1 328 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 PHLDA1Q8WV24 401 aaPredicted RBP8.72□□□□□ -1.01
USP3-206ENST00000558157 SELENOKQ9Y6D0 94 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 NBASA2RRP1 2371 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 IGHV3-43A0A0B4J1X8 118 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 VSTM5A8MXK1 200 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 COX7A2P2O60397 106 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 IGHV3-43DP0DP04 118 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 GNLYP22749 145 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 CD69Q07108 199 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 RIGQ13278 110 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 PDPNQ86YL7 162 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 FXYD5Q96DB9 178 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 TM2D2Q9BX73 214 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 IFI27L2Q9H2X8 130 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 CYSLTR1Q9Y271 337 aa8.72□□□□□ -1.01
USP3-206ENST00000558157 KBTBD11-OT1A0A1B0GTJ5 212 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 A0A1B0GUT8 65 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 hADV38S2A0JD32 116 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 DEFB108AA8MXU0 73 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 CD24P25063 80 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 ZNF137PP52743 207 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 CDSNQ15517 529 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 C10orf113Q5VZT2 155 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 PIP4P2Q8N4L2 257 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 ATP6V0E2Q8NHE4 81 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 BBC3Q96PG8 261 aaPredicted RBP8.71□□□□□ -1.01
USP3-206ENST00000558157 GNG12Q9UBI6 72 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 RELNP78509 3460 aa8.71□□□□□ -1.01
USP3-206ENST00000558157 ESPL1Q14674 2120 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 CFAP46Q8IYW2 2715 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 SLC25A5P05141 298 aaKnown RBP8.71□□□□□ -1.02
USP3-206ENST00000558157 THBDP07204 575 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 HLA-DRB4P13762 266 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 CEBPDP49716 269 aaPredicted RBP8.71□□□□□ -1.02
USP3-206ENST00000558157 WFDC2Q14508 124 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 CR1LQ2VPA4 569 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 C3orf36Q3SXR2 165 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 ASPHD1Q5U4P2 390 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 ACP7Q6ZNF0 438 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 BCL6BQ8N143 479 aaPredicted RBP8.71□□□□□ -1.02
USP3-206ENST00000558157 OR9G1Q8NH87 305 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 ZNF414Q96IQ9 312 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 HLA-DRB4X5D2U9 266 aa8.71□□□□□ -1.02
USP3-206ENST00000558157 TRAV5A0A0B4J249 113 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 MOSP00540 346 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 PRB1P04280 392 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 CSN3P07498 182 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 Q6AWC8 147 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 OR8A1Q8NGG7 326 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 C8orf46Q8TAG6 207 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 HCFC1P51610 2035 aa8.7□□□□□ -1.02
USP3-206ENST00000558157 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.7□□□□□ -1.02
USP3-206ENST00000558157 TCRBV4S1A1TA0A5B7 111 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms