RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 LINC00479Q96M42 142 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 IL36BQ9NZH7 164 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 TRBV19A0A075B6N1 114 aa20.5■□□□□ 0.87
CCDC88C-205ENST00000553403 IGHV4-31P0DP07 118 aa20.5■□□□□ 0.87
CCDC88C-205ENST00000553403 ERVFC1-1P60608 527 aa20.5■□□□□ 0.87
CCDC88C-205ENST00000553403 OR5I1Q13606 314 aa20.5■□□□□ 0.87
CCDC88C-205ENST00000553403 C9orf152Q5JTZ5 239 aa20.5■□□□□ 0.87
CCDC88C-205ENST00000553403 LYPD1Q8N2G4 141 aa20.5■□□□□ 0.87
CCDC88C-205ENST00000553403 TRAV9-1A0A075B6T8 112 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 FAM223BA6NKX1 122 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 ISLRO14498 428 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 BRI3O95415 125 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 GPR183P32249 361 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 SNRPEP62304 92 aaKnown RBP20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 PRSS57Q6UWY2 283 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 BAGE2Q86Y30 109 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 FAM223AQ8IWN6 122 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 SMIM12Q96EX1 92 aa20.49■□□□□ 0.87
CCDC88C-205ENST00000553403 H3BTX0 84 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 FAM3BP58499 235 aaPredicted RBP20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 ATP5G2Q06055 141 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 CCDC140Q96MF4 163 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 RABAC1Q9UI14 185 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 V9GYV3 84 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 AP4M1O00189 453 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 BMPR1BO00238 502 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 TCRAP04437 139 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 CLEC3BP05452 202 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 UBE2G1P62253 170 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 BCL6BQ8N143 479 aaPredicted RBP20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 MS4A10Q96PG2 267 aa20.48■□□□□ 0.87
CCDC88C-205ENST00000553403 TRAV34A0A0B4J273 112 aa20.47■□□□□ 0.87
CCDC88C-205ENST00000553403 H3BUA1 57 aa20.47■□□□□ 0.87
CCDC88C-205ENST00000553403 PHOX2AO14813 284 aa20.47■□□□□ 0.87
CCDC88C-205ENST00000553403 MAPK1IP1LQ8NDC0 245 aa20.47■□□□□ 0.87
CCDC88C-205ENST00000553403 FMC1Q96HJ9 113 aa20.47■□□□□ 0.87
CCDC88C-205ENST00000553403 ZNF414Q96IQ9 312 aa20.47■□□□□ 0.87
CCDC88C-205ENST00000553403 UBE2CO00762 179 aa20.46■□□□□ 0.87
CCDC88C-205ENST00000553403 MGST1P10620 155 aaKnown RBP20.46■□□□□ 0.87
CCDC88C-205ENST00000553403 FSHBP01225 129 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 PDE6HQ13956 83 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 SLC17A3O00476 420 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 RPL7P18124 248 aaKnown RBP20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 DEFB112Q30KQ8 113 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 SMUG1Q53HV7 270 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 TOMM20LQ6UXN7 152 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 CLEC19AQ6UXS0 136 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 CMTM2Q8TAZ6 248 aa20.45■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BKO60814 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BJP06899 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BOP23527 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BBP33778 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BDP58876 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BCP62807 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST2H2BEQ16778 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 RPEL1Q2QD12 228 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST2H2BFQ5QNW6 126 aaPredicted RBP20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 SIGLEC15Q6ZMC9 328 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 FAM231DQ6ZW35 169 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BHQ93079 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 GPR82Q96P67 336 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BNQ99877 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 HIST1H2BMQ99879 126 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 ZFAND3Q9H8U3 227 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 RPH3ALQ9UNE2 315 aa20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.44■□□□□ 0.86
CCDC88C-205ENST00000553403 CSMD1Q96PZ7 3565 aa20.43■□□□□ 0.86
CCDC88C-205ENST00000553403 PDZD2O15018 2839 aa20.43■□□□□ 0.86
CCDC88C-205ENST00000553403 IBA57Q5T440 356 aaKnown RBP20.43■□□□□ 0.86
CCDC88C-205ENST00000553403 FRZBQ92765 325 aa20.43■□□□□ 0.86
CCDC88C-205ENST00000553403 RNASE7Q9H1E1 156 aaKnown RBP20.43■□□□□ 0.86
CCDC88C-205ENST00000553403 LINC00527Q9UJ94 153 aa20.43■□□□□ 0.86
CCDC88C-205ENST00000553403 ZNF580Q9UK33 172 aa20.43■□□□□ 0.86
CCDC88C-205ENST00000553403 ZNF320A2RRD8 509 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 TRGV3P03979 118 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 PPIFP30405 207 aaKnown RBP20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 RAB9AP51151 201 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 EXOC3-AS1Q8N2X6 119 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 Q96MF0 132 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 C17orf77Q96MU5 243 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 TRBV6-1A0A0K0K1D8 114 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 TRGC1P0CF51 173 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 RELQ04864 619 aaPredicted RBP20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 C9orf139Q6ZV77 190 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 KRTAP1-3Q8IUG1 177 aa20.42■□□□□ 0.86
CCDC88C-205ENST00000553403 BLCAPP62952 87 aa20.41■□□□□ 0.86
CCDC88C-205ENST00000553403 FABP9Q0Z7S8 132 aa20.41■□□□□ 0.86
CCDC88C-205ENST00000553403 NHLRC2Q8NBF2 726 aa20.41■□□□□ 0.86
CCDC88C-205ENST00000553403 GNB4Q9HAV0 340 aa20.41■□□□□ 0.86
CCDC88C-205ENST00000553403 LTAP01374 205 aa20.4■□□□□ 0.86
CCDC88C-205ENST00000553403 ACTL10Q5JWF8 245 aa20.4■□□□□ 0.86
CCDC88C-205ENST00000553403 OR5R1Q8NH85 324 aa20.4■□□□□ 0.86
CCDC88C-205ENST00000553403 USMG5Q96IX5 58 aa20.4■□□□□ 0.86
CCDC88C-205ENST00000553403 MLST8Q9BVC4 326 aa20.4■□□□□ 0.86
CCDC88C-205ENST00000553403 IER3P46695 156 aa20.39■□□□□ 0.86
CCDC88C-205ENST00000553403 IGHV4-59P01825 116 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 NDUFA6P56556 154 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 PSG9Q00887 426 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 OR8I2Q8N0Y5 310 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 POLQO75417 2590 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms