RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 MYOZ3Q8TDC0 251 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 SLC37A2Q8TED4 501 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 SPTSSAQ969W0 71 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 IFI27L1Q96BM0 104 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 HIST1H4GQ99525 98 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 EDA2RQ9HAV5 297 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 DEPPQ9NTK1 212 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 TRBV7-3A0A075B6L6 115 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 IGKV1-6A0A0C4DH72 117 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 IGKV1-12A0A0C4DH73 117 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 FAM240AA0A1B0GVK7 77 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 FRG2CA6NGY1 282 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 J3QLI3 93 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 K7ESM1 405 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 ATP5LO75964 103 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 LTAP01374 205 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 IGKV1D-12P01611 117 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 B4GALT1P15291 398 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 RPL13AP40429 203 aaKnown RBP4.65□□□□□ -1.67
CD44-225ENST00000527326 HSPE1P61604 102 aaKnown RBP4.65□□□□□ -1.67
CD44-225ENST00000527326 HHEXQ03014 270 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 RIGQ13278 110 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 OR1C1Q15619 314 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 TWIST1Q15672 202 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 TEX36Q5VZQ5 186 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 TXNDC8Q6A555 127 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 ASCL5Q7RTU5 278 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 GJC3Q8NFK1 279 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 FAM57AQ8TBR7 257 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 CFHR4Q92496 578 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 NPIPB3Q92617 1050 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 GPHA2Q96T91 129 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 PRRG4Q9BZD6 226 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 EPDR1Q9UM22 224 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 LSM4Q9Y4Z0 139 aaKnown RBP4.65□□□□□ -1.67
CD44-225ENST00000527326 TIMM8BQ9Y5J9 83 aaPredicted RBP4.65□□□□□ -1.67
CD44-225ENST00000527326 CHCHD2Q9Y6H1 151 aaPredicted RBP4.65□□□□□ -1.67
CD44-225ENST00000527326 ADAMTS20P59510 1910 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 ARID1AO14497 2285 aa4.65□□□□□ -1.67
CD44-225ENST00000527326 PHF3Q92576 2039 aaKnown RBP4.64□□□□□ -1.67
CD44-225ENST00000527326 IGKV1-27A0A075B6S5 117 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 PEX7O00628 323 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 ACTL6BO94805 426 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 P01737 135 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 IGKCP01834 107 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 LGALS1P09382 135 aaKnown RBP4.64□□□□□ -1.67
CD44-225ENST00000527326 LINC00271P0C7V0 271 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 CNTFRP26992 372 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 TMEM258P61165 79 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 GNG5P63218 68 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 NNATQ16517 81 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 TMEM196Q5HYL7 178 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 GAGE2AQ6NT46 116 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 SLC25A48Q6ZT89 311 aaKnown RBP4.64□□□□□ -1.67
CD44-225ENST00000527326 IGFBPL1Q8WX77 278 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 ZNF524Q96C55 264 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 TIMD4Q96H15 378 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 ZNF488Q96MN9 340 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 ODF3Q96PU9 254 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 PRSS22Q9GZN4 317 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 ATG2BQ96BY7 2078 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 COL4A6Q14031 1691 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 KIAA1549Q9HCM3 1950 aa4.64□□□□□ -1.67
CD44-225ENST00000527326 PCSK5Q92824 1860 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 A0A096LNJ9 63 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 TRAV8-1A0A0A6YYK1 113 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 LOC107984156A0A0G2JMH3 177 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 TINCRA0A1B0GVN0 87 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 MBD3L4A6NDZ8 208 aaPredicted RBP4.63□□□□□ -1.67
CD44-225ENST00000527326 MBD3L3A6NE82 208 aaPredicted RBP4.63□□□□□ -1.67
CD44-225ENST00000527326 MBD3L5A6NJ08 208 aaPredicted RBP4.63□□□□□ -1.67
CD44-225ENST00000527326 PRSS46E5RG02 174 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 M0R135 149 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 DPM2O94777 84 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 CRYGAP11844 174 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 CD52P31358 61 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 ZNF138P52744 262 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 FGF12P61328 243 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 KRTAP27-1Q3LI81 207 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 DUX4L9Q6RFH8 374 aaPredicted RBP4.63□□□□□ -1.67
CD44-225ENST00000527326 Q6ZQT7 251 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 MIR17HGQ75NE6 70 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 TRPT1Q86TN4 253 aaKnown RBP4.63□□□□□ -1.67
CD44-225ENST00000527326 ARL17AQ8IVW1 177 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 ZNF799Q96GE5 643 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 PGLYRP4Q96LB8 373 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 TRGV9Q99603 122 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 CHCHD5Q9BSY4 110 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 PRORYQ9H606 182 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 TMEM74BQ9NUR3 256 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 PRNDQ9UKY0 176 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 AMMECR1Q9Y4X0 333 aaPredicted RBP4.63□□□□□ -1.67
CD44-225ENST00000527326 U3KQK5 164 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 V9GYY9 64 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 ARHGAP21Q5T5U3 1957 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 NCOR1O75376 2440 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 SPTBP11277 2137 aa4.63□□□□□ -1.67
CD44-225ENST00000527326 BDP1A6H8Y1 2624 aa4.62□□□□□ -1.67
CD44-225ENST00000527326 NCOA6Q14686 2063 aaPredicted RBP4.62□□□□□ -1.67
CD44-225ENST00000527326 PIEZO1Q92508 2521 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms