RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 FLVCR1-AS1Q8TAF5 88 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 CLDN16Q9Y5I7 305 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 ADAMTS7Q9UKP4 1686 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 TREML4Q6UXN2 200 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 ANKRD36A6QL64 1941 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 MYMXA0A1B0GTQ4 84 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-212ENST00000491769 A8MWV9 139 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 AMBPP02760 352 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 GAGE2EQ4V326 116 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 FBLIM1Q8WUP2 373 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 GAGE2DQ9UEU5 116 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 UBE2E1P51965 193 aa10.69□□□□□ -0.7
COL6A3-212ENST00000491769 SUPT4H1P63272 117 aaKnown RBP10.69□□□□□ -0.7
COL6A3-212ENST00000491769 PRTN3P24158 256 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 PSG3Q16557 428 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 DMRTC2Q8IXT2 367 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-212ENST00000491769 IGF2BP2-AS1Q96M15 143 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 ZDBF2Q9HCK1 2354 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 GAGE6Q13070 117 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 TMEM256Q8N2U0 113 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 TIMM21Q9BVV7 248 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 REG4Q9BYZ8 158 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 NHLRC3Q5JS37 347 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 CITED2Q99967 270 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-212ENST00000491769 IGKV1-12A0A0C4DH73 117 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 EFNA2O43921 213 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 IGKV1D-12P01611 117 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 PFN2P35080 140 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 GGTLC1Q9BX51 225 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 VSIRQ9H7M9 311 aa10.68□□□□□ -0.7
COL6A3-212ENST00000491769 TRAV25A0A0B4J276 109 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 ESDP10768 282 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 PMVKQ15126 192 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 IGKV1OR2-108A0A075B7D4 117 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 A0A0A6YYD4 124 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 KIF13BQ9NQT8 1826 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 PARP14Q460N5 1801 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 A0A087WV48 116 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 SHISA3A0PJX4 238 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 KLF5Q13887 457 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-212ENST00000491769 TCTEX1D4Q5JR98 221 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 CHCHD1Q96BP2 118 aaKnown RBP10.67□□□□□ -0.7
COL6A3-212ENST00000491769 IGKV2D-24A0A075B6R9 120 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 MEGF9Q9H1U4 602 aa10.67□□□□□ -0.7
COL6A3-212ENST00000491769 DICER1Q9UPY3 1922 aaKnown RBP10.66□□□□□ -0.7
COL6A3-212ENST00000491769 TRAV8-3A0A0A6YYJ7 113 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 CLPSL2Q6UWE3 100 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 WDR83OSQ9Y284 106 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 RFNGQ9Y644 331 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 ARFGEF1Q9Y6D6 1849 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 PRB1P04280 392 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 LIME1Q9H400 295 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 PLXNA1Q9UIW2 1896 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 TUBGCP6Q96RT7 1819 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 MGST2Q99735 147 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 Q9HAA7 133 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 IGKV1D-17A0A075B6S4 117 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 IGKV1D-8A0A087WSZ0 117 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 IGHV2-70DA0A0C4DH43 119 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 J3QLI3 93 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 IGKV1-5P01602 117 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 DNAJC30Q96LL9 226 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 NDUFS5O43920 106 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 LY6G5BQ8NDX9 201 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 ZNF479Q96JC4 524 aa10.66□□□□□ -0.7
COL6A3-212ENST00000491769 BRWD3Q6RI45 1802 aa10.65□□□□□ -0.7
COL6A3-212ENST00000491769 SMKR1H3BMG3 65 aa10.65□□□□□ -0.7
COL6A3-212ENST00000491769 NXPH4O95158 308 aa10.65□□□□□ -0.7
COL6A3-212ENST00000491769 IGLV2-23P01705 113 aa10.65□□□□□ -0.7
COL6A3-212ENST00000491769 TRPT1Q86TN4 253 aaKnown RBP10.65□□□□□ -0.7
COL6A3-212ENST00000491769 IGHV3-38A0A0C4DH36 116 aa10.65□□□□□ -0.7
COL6A3-212ENST00000491769 G3V318 75 aa10.65□□□□□ -0.7
COL6A3-212ENST00000491769 TAL2Q16559 108 aa10.65□□□□□ -0.7
COL6A3-212ENST00000491769 CHD5Q8TDI0 1954 aa10.65□□□□□ -0.71
COL6A3-212ENST00000491769 PDCD11Q14690 1871 aaKnown RBP10.65□□□□□ -0.71
COL6A3-212ENST00000491769 A0A0J9YY99 117 aa10.65□□□□□ -0.71
COL6A3-212ENST00000491769 IGHG3P01860 377 aa10.65□□□□□ -0.71
COL6A3-212ENST00000491769 SPOCK3Q9BQ16 436 aa10.65□□□□□ -0.71
COL6A3-212ENST00000491769 OVOL2Q9BRP0 275 aa10.65□□□□□ -0.71
COL6A3-212ENST00000491769 SMPXQ9UHP9 88 aa10.65□□□□□ -0.71
COL6A3-212ENST00000491769 COL5A3P25940 1745 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-212ENST00000491769 RPRMLQ8N4K4 120 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 GAS1P54826 345 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 DMRT1Q9Y5R6 373 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 LRRC37AA6NMS7 1700 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 IGKV1-27A0A075B6S5 117 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 TRAV12-2A0A075B6T6 113 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 GNB1LQ9BYB4 327 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 H3BMM0 161 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 ANGP03950 147 aaKnown RBP10.64□□□□□ -0.71
COL6A3-212ENST00000491769 UBE2WQ96B02 151 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 LINC00205P59089 165 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 ZNRD1Q9P1U0 126 aa10.64□□□□□ -0.71
COL6A3-212ENST00000491769 ZNRF2Q8NHG8 242 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 SIPA1L3O60292 1781 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-212ENST00000491769 WDR90Q96KV7 1748 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 EP300Q09472 2414 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-212ENST00000491769 TRAV8-1A0A0A6YYK1 113 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 GAGE2AQ6NT46 116 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms