RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 SPEF2Q9C093 1822 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 ZNF670-ZNF695F2Z2N8 137 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 ZNF728P0DKX0 622 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 CSRP1P21291 193 aaKnown RBP2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 FGF7P21781 194 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 LSM3P62310 102 aaKnown RBP2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 SUPT4H1P63272 117 aaKnown RBP2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 ZNF660Q6AZW8 331 aaPredicted RBP2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 GLIPR1L1Q6UWM5 242 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 OR4B1Q8NGF8 309 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 PFN4Q8NHR9 129 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 MCEEQ96PE7 176 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 PSMG3Q9BT73 122 aaPredicted RBP2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 PLXND1Q9Y4D7 1925 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 TOPBP1Q92547 1522 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 DOCK4Q8N1I0 1966 aa2.36□□□□□ -2.03
HMGB1P38-201ENST00000490557 NAIPQ13075 1403 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 SPATA31E1Q6ZUB1 1445 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 ADGBQ8N7X0 1667 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 CEP164Q9UPV0 1460 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 SHANK1Q9Y566 2161 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 UQCRQO14949 82 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 IGLV6-57P01721 117 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 TCRAP04437 139 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 APODP05090 189 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 AKR1D1P51857 326 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 FOXA1P55317 472 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 PPP3R1P63098 170 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 DYNLT1P63172 113 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 QRFPP83859 136 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 SCIMPQ6UWF3 145 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 TMEM136Q6ZRR5 245 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 OR10AC1Q8NH08 325 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 TMEM191AQ9H0A3 160 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 CCDC167Q9P0B6 97 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 ARHGEF11O15085 1522 aa2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 MED1Q15648 1581 aaPredicted RBP2.35□□□□□ -2.03
HMGB1P38-201ENST00000490557 SHROOM3Q8TF72 1996 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 SCN4AP35499 1836 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 TRAV27A0A087WT01 109 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 TRGV5A0A0B4J1U4 118 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 SDCBPO00560 298 aaPredicted RBP2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 ZNF705BP0CI00 300 aaPredicted RBP2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 AKAIN1P0CW23 69 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 FOXA3P55318 350 aaPredicted RBP2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 KLRD1Q13241 179 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 ZNF181Q2M3W8 571 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 TMEM155Q4W5P6 130 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 C7orf65Q6ZTY9 151 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 DYNAPQ8N1N2 210 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 MORN4Q8NDC4 146 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 OR5D14Q8NGL3 314 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 NIT2Q9NQR4 276 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 SCN3BQ9NY72 215 aa2.34□□□□□ -2.03
HMGB1P38-201ENST00000490557 SEC16AO15027 2179 aa2.34□□□□□ -2.04
HMGB1P38-201ENST00000490557 NUP210Q8TEM1 1887 aaPredicted RBP2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 TRAV7A0A075B6U4 112 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 FAM236AA0A1B0GUQ0 79 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 FAM236BA0A1B0GV22 79 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 ZNF727A8MUV8 499 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 CDC42EP2O14613 210 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 SNAPC5O75971 98 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 SLC25A5P05141 298 aaKnown RBP2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 HLA-DRB4P13762 266 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 COL8A2P25067 703 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 FXYD2P54710 66 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 GNG2P59768 71 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 PLGLB1Q02325 96 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 DIAPH2-AS1Q14236 149 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 LYZL1Q6UWQ5 148 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 Q6ZS52 159 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 KRTAP5-2Q701N4 177 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 WFDC11Q8NEX6 87 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 AQP3Q92482 292 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 OR4C12Q96R67 309 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 NAA38Q9BRA0 125 aaKnown RBP2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 CST9LQ9H4G1 147 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 RERGLQ9H628 205 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 NHP2Q9NX24 153 aaKnown RBP2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 COMMD3Q9UBI1 195 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 HLA-DRB4X5D2U9 266 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 TMEM2Q9UHN6 1383 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 COL18A1P39060 1754 aa2.33□□□□□ -2.04
HMGB1P38-201ENST00000490557 KDM5BQ9UGL1 1544 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 ZNF638Q14966 1978 aaKnown RBP2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 ZNF407Q9C0G0 2248 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 A0A0G2JMM0 328 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 TRBV10-2A0A0K0K1G8 114 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 A0A1W2PPB8 328 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 C11orf86A6NJI1 115 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 KIR3DP1A8MWS1 328 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 H7C2G1 150 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 TIMM17BO60830 172 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 HBDP02042 147 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 P0C880 135 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 TRGC1P0CF51 173 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 COX6A1P12074 109 aa2.32□□□□□ -2.04
HMGB1P38-201ENST00000490557 TPT1P13693 172 aaKnown RBP2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms