RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 LEMD1Q68G75 181 aa10.98□□□□□ -0.65
CUX1-209ENST00000487284 CLEC19AQ6UXS0 136 aa10.98□□□□□ -0.65
CUX1-209ENST00000487284 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.98□□□□□ -0.65
CUX1-209ENST00000487284 DERL1Q9BUN8 251 aa10.98□□□□□ -0.65
CUX1-209ENST00000487284 SMCO4Q9NRQ5 59 aa10.98□□□□□ -0.65
CUX1-209ENST00000487284 TGOLN2O43493 480 aa10.97□□□□□ -0.65
CUX1-209ENST00000487284 CLEC3BP05452 202 aa10.97□□□□□ -0.65
CUX1-209ENST00000487284 NBEAP1P0C6P0 100 aa10.97□□□□□ -0.65
CUX1-209ENST00000487284 MYCNOSP40205 109 aa10.97□□□□□ -0.65
CUX1-209ENST00000487284 TPPP2P59282 170 aa10.97□□□□□ -0.65
CUX1-209ENST00000487284 USMG5Q96IX5 58 aa10.97□□□□□ -0.65
CUX1-209ENST00000487284 RPL23P62829 140 aaKnown RBP10.96□□□□□ -0.65
CUX1-209ENST00000487284 SUMO1P63165 101 aaKnown RBP10.96□□□□□ -0.65
CUX1-209ENST00000487284 C10orf99Q6UWK7 81 aa10.96□□□□□ -0.65
CUX1-209ENST00000487284 ZNF329Q86UD4 541 aa10.96□□□□□ -0.65
CUX1-209ENST00000487284 TCEAL7Q9BRU2 100 aa10.96□□□□□ -0.65
CUX1-209ENST00000487284 ELOVL1Q9BW60 279 aa10.96□□□□□ -0.65
CUX1-209ENST00000487284 TUBA4BQ9H853 241 aa10.96□□□□□ -0.65
CUX1-209ENST00000487284 ZFAND3Q9H8U3 227 aa10.96□□□□□ -0.65
CUX1-209ENST00000487284 ATRQ13535 2644 aa10.96□□□□□ -0.66
CUX1-209ENST00000487284 ZNF98A6NK75 572 aa10.95□□□□□ -0.66
CUX1-209ENST00000487284 MRPS12O15235 138 aaKnown RBP10.95□□□□□ -0.66
CUX1-209ENST00000487284 HIST1H1EP10412 219 aaKnown RBP10.95□□□□□ -0.66
CUX1-209ENST00000487284 BPIFA4PQ86YQ2 179 aa10.95□□□□□ -0.66
CUX1-209ENST00000487284 C2CD4CQ8TF44 421 aa10.95□□□□□ -0.66
CUX1-209ENST00000487284 TRBV20OR9-2A0A075B6H5 130 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 TMEM89A2RUT3 159 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 C9JCJ5 164 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 BMPR1BO00238 502 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 TSPAN4O14817 238 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 NDUFA7O95182 113 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 IGHG4P01861 327 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 PF4V1P10720 104 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 CRYBB3P26998 211 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 ADIRFQ15847 76 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 TOMM20LQ6UXN7 152 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 LINC01006Q8NI28 216 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 KLK15Q9H2R5 256 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 C16orf95Q9H693 158 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 RABAC1Q9UI14 185 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 RNF24Q9Y225 148 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 IGLC2P0DOY2 106 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 S100A7P31151 101 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 RELQ04864 619 aaPredicted RBP10.94□□□□□ -0.66
CUX1-209ENST00000487284 BLNKQ8WV28 456 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 GNB4Q9HAV0 340 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 ZNF586Q9NXT0 402 aa10.94□□□□□ -0.66
CUX1-209ENST00000487284 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.93□□□□□ -0.66
CUX1-209ENST00000487284 A0A0G2JLM5 398 aa10.93□□□□□ -0.66
CUX1-209ENST00000487284 PSMB8P28062 276 aa10.93□□□□□ -0.66
CUX1-209ENST00000487284 RPL35P42766 123 aaKnown RBP10.93□□□□□ -0.66
CUX1-209ENST00000487284 RANP62826 216 aaKnown RBP10.93□□□□□ -0.66
CUX1-209ENST00000487284 LCNL1Q6ZST4 164 aa10.93□□□□□ -0.66
CUX1-209ENST00000487284 LINC01551Q86U37 167 aa10.93□□□□□ -0.66
CUX1-209ENST00000487284 OR4F17Q8NGA8 305 aa10.93□□□□□ -0.66
CUX1-209ENST00000487284 TMEM190Q8WZ59 177 aa10.93□□□□□ -0.66
CUX1-209ENST00000487284 TMEM242Q9NWH2 141 aa10.93□□□□□ -0.66
CUX1-209ENST00000487284 IGHV3-35A0A0C4DH35 117 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 PPP5D1E7EU14 171 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 SNRPCP09234 159 aaKnown RBP10.92□□□□□ -0.66
CUX1-209ENST00000487284 RAB9AP51151 201 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 SLC35B1P78383 322 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.92□□□□□ -0.66
CUX1-209ENST00000487284 C15orf54Q8N8G6 183 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 CTDSP1Q9GZU7 261 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 PRELID1Q9Y255 219 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 LY96Q9Y6Y9 160 aa10.92□□□□□ -0.66
CUX1-209ENST00000487284 TRBV19A0A075B6N1 114 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 CLPSL1A2RUU4 121 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 CXorf65A6NEN9 183 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 HELTA6NFD8 242 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 COLCA2A8K830 154 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 PEX7O00628 323 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 ARL3P36405 182 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 RNF212Q495C1 297 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 PRIMA1Q86XR5 153 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 KLHDC1Q8N7A1 406 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 C5orf17Q8NAS9 161 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 HIST1H2BAQ96A08 127 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 YPEL4Q96NS1 127 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 Q9H3A6 140 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 OTORQ9NRC9 128 aa10.91□□□□□ -0.66
CUX1-209ENST00000487284 TMA7Q9Y2S6 64 aaKnown RBP10.91□□□□□ -0.66
CUX1-209ENST00000487284 PGPA6NDG6 321 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 H3BTX0 84 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 TRBV12-3P01733 135 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 MT-ND4LP03901 98 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 RPL7P18124 248 aaKnown RBP10.9□□□□□ -0.66
CUX1-209ENST00000487284 TEX38Q6PEX7 206 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 ISOC2Q96AB3 205 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 EPDR1Q9UM22 224 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 RNF114Q9Y508 228 aa10.9□□□□□ -0.66
CUX1-209ENST00000487284 IGHV3OR16-8A0A075B7F1 116 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 PGPEP1LA6NFU8 196 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 HAX1O00165 279 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 SLC25A5P05141 298 aaKnown RBP10.9□□□□□ -0.67
CUX1-209ENST00000487284 CNN1P51911 297 aaKnown RBP10.9□□□□□ -0.67
CUX1-209ENST00000487284 PDE6HQ13956 83 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 CENPWQ5EE01 88 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 FAM209BQ5JX69 171 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms