RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 MED9Q9NWA0 146 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 MRPL27Q9P0M9 148 aaKnown RBP12.92□□□□□ -0.34
VIM-205ENST00000485947 PEMTQ9UBM1 199 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 RNF24Q9Y225 148 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 HIGD1AQ9Y241 93 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 LINC00862A6NCI5 91 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 PPP5D1E7EU14 171 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 TAS2R45P59539 299 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 OR2K2Q8NGT1 345 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 SFT2D1Q8WV19 159 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 WWC2-AS2Q96NR7 200 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 PBDC1Q9BVG4 233 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 ZFAND3Q9H8U3 227 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 DOK5Q9P104 306 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 PFDN2Q9UHV9 154 aa12.91□□□□□ -0.34
VIM-205ENST00000485947 TRBV12-3P01733 135 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 STAG3L2P0CL84 134 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 STAG3L3P0CL85 134 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 KHDC3LQ587J8 217 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 TOMM20LQ6UXN7 152 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 IL34Q6ZMJ4 242 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 SSX7Q7RTT5 188 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 LINC00305Q7Z4B0 112 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 ZNF414Q96IQ9 312 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 HRH4Q9H3N8 390 aa12.9□□□□□ -0.34
VIM-205ENST00000485947 SEPSECSQ9HD40 501 aaKnown RBP12.9□□□□□ -0.34
VIM-205ENST00000485947 TECRQ9NZ01 308 aaKnown RBP12.9□□□□□ -0.34
VIM-205ENST00000485947 A8MZ25 164 aa12.89□□□□□ -0.35
VIM-205ENST00000485947 C8orf88P0DMB2 117 aa12.89□□□□□ -0.35
VIM-205ENST00000485947 SYNJ2BPP57105 145 aa12.89□□□□□ -0.35
VIM-205ENST00000485947 USF2Q15853 346 aaPredicted RBP12.89□□□□□ -0.35
VIM-205ENST00000485947 LCN15Q6UWW0 184 aa12.89□□□□□ -0.35
VIM-205ENST00000485947 PQLC2Q6ZP29 291 aa12.89□□□□□ -0.35
VIM-205ENST00000485947 RABAC1Q9UI14 185 aa12.89□□□□□ -0.35
VIM-205ENST00000485947 U3KQK5 164 aa12.89□□□□□ -0.35
VIM-205ENST00000485947 H3BRN7 92 aa12.88□□□□□ -0.35
VIM-205ENST00000485947 CXorf1O96002 111 aa12.88□□□□□ -0.35
VIM-205ENST00000485947 SPATA31B1PQ5VZV4 182 aa12.88□□□□□ -0.35
VIM-205ENST00000485947 LCN12Q6JVE5 192 aa12.88□□□□□ -0.35
VIM-205ENST00000485947 MIR17HGQ75NE6 70 aa12.88□□□□□ -0.35
VIM-205ENST00000485947 GPHB5Q86YW7 130 aa12.88□□□□□ -0.35
VIM-205ENST00000485947 SHANK2-AS3Q9BTD1 123 aa12.88□□□□□ -0.35
VIM-205ENST00000485947 SLC25A39Q9BZJ4 359 aaPredicted RBP12.88□□□□□ -0.35
VIM-205ENST00000485947 LGALS9O00182 355 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 CSN3P07498 182 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 PPT1P50897 306 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 PMS2P11Q13670 270 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 FAM106AQ4KMX7 169 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 STXBP6Q8NFX7 210 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 TMEM190Q8WZ59 177 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 UHRF2Q96PU4 802 aa12.87□□□□□ -0.35
VIM-205ENST00000485947 IGHV3-35A0A0C4DH35 117 aa12.86□□□□□ -0.35
VIM-205ENST00000485947 PSMB3P49720 205 aa12.86□□□□□ -0.35
VIM-205ENST00000485947 MARC2Q969Z3 335 aa12.86□□□□□ -0.35
VIM-205ENST00000485947 METTL26Q96S19 204 aa12.86□□□□□ -0.35
VIM-205ENST00000485947 SLC25A2Q9BXI2 301 aa12.86□□□□□ -0.35
VIM-205ENST00000485947 RAB19A4D1S5 217 aa12.85□□□□□ -0.35
VIM-205ENST00000485947 HMGB3O15347 200 aaKnown RBP12.85□□□□□ -0.35
VIM-205ENST00000485947 IFNA1P01562 189 aa12.85□□□□□ -0.35
VIM-205ENST00000485947 ARL14EPLP0DKL9 152 aa12.85□□□□□ -0.35
VIM-205ENST00000485947 FGF8P55075 233 aaPredicted RBP12.85□□□□□ -0.35
VIM-205ENST00000485947 MORN5Q5VZ52 161 aa12.85□□□□□ -0.35
VIM-205ENST00000485947 NARS2Q96I59 477 aaKnown RBP12.85□□□□□ -0.35
VIM-205ENST00000485947 FAM167A-AS1Q96KT0 104 aa12.85□□□□□ -0.35
VIM-205ENST00000485947 A0A1B0GV50 99 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 ZNF98A6NK75 572 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 K7EMT4 169 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 OR7C2O60412 319 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 NPPCP23582 126 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 CRYBB3P26998 211 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 GCHFRP30047 84 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 TAGLN2P37802 199 aaKnown RBP12.84□□□□□ -0.35
VIM-205ENST00000485947 COMMD7Q86VX2 200 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 FAM210AQ96ND0 272 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 OR51M1Q9H341 326 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 MANBALQ9NQG1 85 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 TMEM167BQ9NRX6 74 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 TMEM14CQ9P0S9 112 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 UFC1Q9Y3C8 167 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 BIRC6Q9NR09 4857 aa12.84□□□□□ -0.35
VIM-205ENST00000485947 EIF3GO75821 320 aaKnown RBP eCLIP12.83□□□□□ -0.36
VIM-205ENST00000485947 FRMD6-AS1P0C7T7 363 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 C1orf194Q5T5A4 169 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 GTSCR1Q86UQ5 136 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 BPIFA4PQ86YQ2 179 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 Q8N1Y9 231 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 EIF4E3Q8N5X7 224 aaKnown RBP12.83□□□□□ -0.36
VIM-205ENST00000485947 GPR82Q96P67 336 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 PAXXQ9BUH6 204 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 C20orf24Q9BUV8 137 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 SCRT1Q9BWW7 348 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 U3KQE9 123 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 ARL2-SNX15V9GYD0 113 aa12.83□□□□□ -0.36
VIM-205ENST00000485947 TRAV5A0A0B4J249 113 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 A8MWP6 167 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 CCL20P78556 96 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 UNQ9165/PRO28630Q6UXU0 137 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 IQCF2Q8IXL9 164 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 SUN5Q8TC36 379 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 ZNF503Q96F45 646 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms