RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 RPP21Q9H633 154 aaKnown RBP11.36□□□□□ -0.59
LIG1-202ENST00000427526 INSIG2Q9Y5U4 225 aa11.36□□□□□ -0.59
LIG1-202ENST00000427526 CAMPP49913 170 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 MMDQ15546 238 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 CT83Q5H943 113 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 GTSF1Q8WW33 167 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 Q9H3A6 140 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 RNF24Q9Y225 148 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 IGLC2P0DOY2 106 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 IGLC3P0DOY3 106 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 PRB3Q04118 309 aaPredicted RBP11.35□□□□□ -0.59
LIG1-202ENST00000427526 TCF24Q7RTU0 167 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 WNT10AQ9GZT5 417 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 ZNF492Q9P255 531 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 M0QZ24 198 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 LY6HO94772 140 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 NDUFB8O95169 186 aa11.35□□□□□ -0.59
LIG1-202ENST00000427526 H3BTX0 84 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 IGLC1P0CG04 106 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 WFDC12Q8WWY7 111 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 FAM181BA6NEQ2 426 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 HSBP1O75506 76 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 PSG1P11464 419 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 HBBP68871 147 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 TMEM95Q3KNT9 176 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 EBLN2Q6P2I7 272 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 ORAOV1Q8WV07 137 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 URB1-AS1Q96HZ7 61 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 UQCR10Q9UDW1 63 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 DCHS2Q6V1P9 2916 aa11.34□□□□□ -0.59
LIG1-202ENST00000427526 A8MWL6 223 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 I3L2K1 104 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 OR8B3Q8NGG8 313 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 OR8B2Q96RD0 313 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 HIGD1AQ9Y241 93 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 LCN12Q6JVE5 192 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 OR2D3Q8NGH3 330 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 GFRA4Q9GZZ7 299 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 TMEM14CQ9P0S9 112 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 MALRD1Q5VYJ5 2156 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 C2orf70A6NJV1 201 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 NPIPB6E9PJ23 425 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 P01737 135 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 UBE2V1Q13404 147 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 Q5PR19 223 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 FBXL15Q9H469 300 aa11.33□□□□□ -0.6
LIG1-202ENST00000427526 SOX21Q9Y651 276 aaPredicted RBP11.33□□□□□ -0.6
LIG1-202ENST00000427526 LY6LH3BQJ8 138 aa11.32□□□□□ -0.6
LIG1-202ENST00000427526 M0R2Z0 102 aa11.32□□□□□ -0.6
LIG1-202ENST00000427526 IGLV2-11P01706 119 aa11.32□□□□□ -0.6
LIG1-202ENST00000427526 PMCHL1Q16048 86 aa11.32□□□□□ -0.6
LIG1-202ENST00000427526 SRSF12Q8WXF0 261 aaKnown RBP11.32□□□□□ -0.6
LIG1-202ENST00000427526 SLC25A39Q9BZJ4 359 aaPredicted RBP11.32□□□□□ -0.6
LIG1-202ENST00000427526 SPTBN1Q01082 2364 aaKnown RBP11.32□□□□□ -0.6
LIG1-202ENST00000427526 HOXB4P17483 251 aaPredicted RBP11.32□□□□□ -0.6
LIG1-202ENST00000427526 OTORQ9NRC9 128 aa11.32□□□□□ -0.6
LIG1-202ENST00000427526 RBP4P02753 201 aa11.31□□□□□ -0.6
LIG1-202ENST00000427526 RNASEKQ6P5S7 137 aaKnown RBP11.31□□□□□ -0.6
LIG1-202ENST00000427526 FAM231BA6NCW3 169 aa11.31□□□□□ -0.6
LIG1-202ENST00000427526 LYZP61626 148 aa11.31□□□□□ -0.6
LIG1-202ENST00000427526 PRR31Q5SQ13 230 aa11.31□□□□□ -0.6
LIG1-202ENST00000427526 ATOH7Q8N100 152 aa11.31□□□□□ -0.6
LIG1-202ENST00000427526 PGLYRP4Q96LB8 373 aa11.31□□□□□ -0.6
LIG1-202ENST00000427526 RNF5Q99942 180 aa11.31□□□□□ -0.6
LIG1-202ENST00000427526 PPIAL4CA0A0B4J2A2 164 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 OVOL3O00110 214 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 IGKV1-17P01599 117 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 PPIAL4GP0DN37 164 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 UQCRFS1P47985 274 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 RBPMS2Q6ZRY4 209 aaKnown RBP11.3□□□□□ -0.6
LIG1-202ENST00000427526 Q86TA4 180 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 KLHDC1Q8N7A1 406 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 HIVEP3Q5T1R4 2406 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 TRAV8-1A0A0A6YYK1 113 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 RPEQ96AT9 228 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 HRNRQ86YZ3 2850 aaPredicted RBP11.3□□□□□ -0.6
LIG1-202ENST00000427526 ZNF785A8K8V0 405 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 COX7A1P24310 79 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 CD24P25063 80 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 LDLRAD2Q5SZI1 272 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 FAM120AOSQ5T036 256 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 Q6ZN92 141 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 S100A7AQ86SG5 101 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 EXOC3-AS1Q8N2X6 119 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 KIR3DL3Q8N743 410 aa11.3□□□□□ -0.6
LIG1-202ENST00000427526 DAZAP1Q96EP5 407 aaKnown RBP11.3□□□□□ -0.6
LIG1-202ENST00000427526 CIARTQ8N365 385 aaPredicted RBP11.29□□□□□ -0.6
LIG1-202ENST00000427526 STPG4Q8N801 248 aa11.29□□□□□ -0.6
LIG1-202ENST00000427526 RASL11BQ9BPW5 248 aa11.29□□□□□ -0.6
LIG1-202ENST00000427526 SRSF8Q9BRL6 282 aaKnown RBP11.29□□□□□ -0.6
LIG1-202ENST00000427526 PKD1L2Q7Z442 2459 aa11.29□□□□□ -0.6
LIG1-202ENST00000427526 TRBV6-1A0A0K0K1D8 114 aa11.29□□□□□ -0.6
LIG1-202ENST00000427526 APOHP02749 345 aaPredicted RBP11.29□□□□□ -0.6
LIG1-202ENST00000427526 Q71RC1 249 aaPredicted RBP11.29□□□□□ -0.6
LIG1-202ENST00000427526 SPATA12Q7Z6I5 190 aa11.29□□□□□ -0.6
LIG1-202ENST00000427526 TXN2Q99757 166 aa11.29□□□□□ -0.6
LIG1-202ENST00000427526 TRAV9-2A0A087WT02 112 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 K7EIM0 57 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 FOXA3P55318 350 aaPredicted RBP11.28□□□□□ -0.6
LIG1-202ENST00000427526 FAM162BQ5T6X4 162 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms