RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ZFHX2Q9C0A1 2572 aaPredicted RBP8.77□□□□□ -1.01
LIMS1-207ENST00000422797 hDV102S1A0JD36 115 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 A6NDN8 102 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 SIVA1O15304 175 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 PSG1P11464 419 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 ARF6P62330 175 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 FAM27E3Q08E93 113 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 PSG3Q16557 428 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 LGALS9BQ3B8N2 356 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 LGALS9CQ6DKI2 356 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 COX8CQ7Z4L0 72 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 OR9G4Q8NGQ1 327 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 PRSS3P2Q8NHM4 247 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 SRSF12Q8WXF0 261 aaKnown RBP8.76□□□□□ -1.01
LIMS1-207ENST00000422797 ZNF48Q96MX3 618 aaPredicted RBP8.76□□□□□ -1.01
LIMS1-207ENST00000422797 ZNF747Q9BV97 191 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 TPSG1Q9NRR2 321 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 PSG8Q9UQ74 426 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 INSIG2Q9Y5U4 225 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 U3KQK5 164 aa8.76□□□□□ -1.01
LIMS1-207ENST00000422797 PTPRZ1P23471 2315 aaPredicted RBP8.76□□□□□ -1.01
LIMS1-207ENST00000422797 I3L2K1 104 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 K7ERU9 68 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 IGLV1-47P01700 117 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 IGHV3-48P01763 117 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 WT1P19544 449 aaPredicted RBP8.75□□□□□ -1.01
LIMS1-207ENST00000422797 WFDC8Q8IUA0 241 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 TMUB1Q9BVT8 246 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 HEATR1Q9H583 2144 aaKnown RBP8.75□□□□□ -1.01
LIMS1-207ENST00000422797 AAMDCQ9H7C9 122 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 DYNLRB1Q9NP97 96 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 PRR14LQ5THK1 2151 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 DYSFO75923 2080 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 IGHV1-3A0A0C4DH29 117 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 PRRG2O14669 202 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 PSG9Q00887 426 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 SRSF2Q01130 221 aaKnown RBP8.75□□□□□ -1.01
LIMS1-207ENST00000422797 SRSF6Q13247 344 aaKnown RBP8.75□□□□□ -1.01
LIMS1-207ENST00000422797 DIAPH2-AS1Q14236 149 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 SIGLEC15Q6ZMC9 328 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 GTF2H5Q6ZYL4 71 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 CCL17Q92583 94 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 RNASE6Q93091 150 aaKnown RBP8.75□□□□□ -1.01
LIMS1-207ENST00000422797 ZC2HC1AQ96GY0 325 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 CTSZQ9UBR2 303 aa8.75□□□□□ -1.01
LIMS1-207ENST00000422797 RALYQ9UKM9 306 aaKnown RBP8.75□□□□□ -1.01
LIMS1-207ENST00000422797 INTS1Q8N201 2190 aaKnown RBP8.74□□□□□ -1.01
LIMS1-207ENST00000422797 MUC21A0A0G2JKD1 596 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 MUC21A0A140T8X8 626 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 SHISA9B4DS77 424 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 BUB1B-PAK6H3BSN5 160 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 M0QZ24 198 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 FCN3O75636 299 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 BSPH1Q075Z2 132 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 TMEM97Q5BJF2 176 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 MUC21Q5SSG8 566 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 LYPD2Q6UXB3 125 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 LINC00173Q6ZV60 143 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 OR4X2Q8NGF9 303 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 SGK494Q96LW2 274 aa8.74□□□□□ -1.01
LIMS1-207ENST00000422797 CACNA1BQ00975 2339 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 OVOL3O00110 214 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 IGKV1-17P01599 117 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 ARMS2P0C7Q2 107 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 CEACAM3P40198 252 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 HSD52Q0P140 79 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 ASPHD1Q5U4P2 390 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 ORMDL3Q8N138 153 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 RPEQ96AT9 228 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 RNF125Q96EQ8 232 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 AP1S3Q96PC3 154 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 CST9LQ9H4G1 147 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 JKAMPQ9P055 326 aa8.73□□□□□ -1.01
LIMS1-207ENST00000422797 TNCP24821 2201 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 RIF1Q5UIP0 2472 aaKnown RBP8.72□□□□□ -1.01
LIMS1-207ENST00000422797 WI2-2373I1.2A0A1W2PRP0 233 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 TMEM189A5PLL7 270 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 H3BRM9 83 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 HBDP02042 147 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 APOBEC3AP31941 199 aaPredicted RBP8.72□□□□□ -1.01
LIMS1-207ENST00000422797 OCIAD2Q56VL3 154 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 FAM104BQ5XKR9 115 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 EXOC3-AS1Q8N2X6 119 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 DEFB124Q8NES8 71 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 PIFOQ8TCI5 191 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 IGFBPL1Q8WX77 278 aa8.72□□□□□ -1.01
LIMS1-207ENST00000422797 TRAV8-1A0A0A6YYK1 113 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 C7orf71A4D174 169 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 B9A039 149 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 BMI1P35226 326 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 C2orf91Q6ZV80 131 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 ZNF414Q96IQ9 312 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 RITA1Q96K30 269 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 PRELID3AQ96N28 172 aa8.71□□□□□ -1.01
LIMS1-207ENST00000422797 IGHV3-72A0A0B4J1Y9 119 aa8.7□□□□□ -1.02
LIMS1-207ENST00000422797 A0A0G2JNJ9 132 aa8.7□□□□□ -1.02
LIMS1-207ENST00000422797 OR2T8A6NH00 312 aa8.7□□□□□ -1.02
LIMS1-207ENST00000422797 H3BTX0 84 aa8.7□□□□□ -1.02
LIMS1-207ENST00000422797 K7EIM0 57 aa8.7□□□□□ -1.02
LIMS1-207ENST00000422797 SMAD7O15105 426 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms