RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 PCNX2A6NKB5 2137 aa13.99□□□□□ -0.17
PHRF1-202ENST00000413872 AMBPP02760 352 aa13.99□□□□□ -0.17
PHRF1-202ENST00000413872 SMIM13P0DJ93 91 aa13.99□□□□□ -0.17
PHRF1-202ENST00000413872 PPIFP30405 207 aaKnown RBP13.99□□□□□ -0.17
PHRF1-202ENST00000413872 YPEL3P61236 119 aaPredicted RBP13.99□□□□□ -0.17
PHRF1-202ENST00000413872 RPL36AP83881 106 aaKnown RBP13.99□□□□□ -0.17
PHRF1-202ENST00000413872 ATRAIDQ6UW56 229 aa13.99□□□□□ -0.17
PHRF1-202ENST00000413872 RPL36ALQ969Q0 106 aaKnown RBP13.99□□□□□ -0.17
PHRF1-202ENST00000413872 OVOL3O00110 214 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 LINC00614P0C842 121 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 TCF21O43680 179 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 ACTL10Q5JWF8 245 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 C5orf24Q7Z6I8 188 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 OR9G4Q8NGQ1 327 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 CHCHD1Q96BP2 118 aaKnown RBP13.98□□□□□ -0.17
PHRF1-202ENST00000413872 SHANK2-AS3Q9BTD1 123 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 TTC28Q96AY4 2481 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 ATP6V0E1O15342 81 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 NDPQ00604 133 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 HS3ST6Q96QI5 342 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 VGLL1Q99990 258 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 IGKV1-6A0A0C4DH72 117 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 FCN3O75636 299 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 LYL1P12980 280 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 PSG3Q16557 428 aa13.98□□□□□ -0.17
PHRF1-202ENST00000413872 SSBP4Q9BWG4 385 aaPredicted RBP13.98□□□□□ -0.17
PHRF1-202ENST00000413872 TMEM14BQ9NUH8 114 aa13.97□□□□□ -0.17
PHRF1-202ENST00000413872 LRRK1Q38SD2 2015 aa13.97□□□□□ -0.17
PHRF1-202ENST00000413872 RBMY1BA6NDE4 496 aaKnown RBP13.97□□□□□ -0.17
PHRF1-202ENST00000413872 RBMY1EA6NEQ0 496 aaKnown RBP13.97□□□□□ -0.17
PHRF1-202ENST00000413872 RNASE1P07998 156 aaKnown RBP13.97□□□□□ -0.17
PHRF1-202ENST00000413872 RBMY1DP0C7P1 496 aaKnown RBP13.97□□□□□ -0.17
PHRF1-202ENST00000413872 RBMY1A1P0DJD3 496 aaKnown RBP13.97□□□□□ -0.17
PHRF1-202ENST00000413872 RBMY1CP0DJD4 496 aa13.97□□□□□ -0.17
PHRF1-202ENST00000413872 ANAPC10Q9UM13 185 aa13.97□□□□□ -0.17
PHRF1-202ENST00000413872 LHFPL4Q7Z7J7 247 aa13.97□□□□□ -0.17
PHRF1-202ENST00000413872 NRN1Q9NPD7 142 aa13.97□□□□□ -0.17
PHRF1-202ENST00000413872 A0A087WX48 190 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 CD28P10747 220 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 LINC00518Q8N0U6 118 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 MUC6Q6W4X9 2439 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 PGPEP1LA6NFU8 196 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 ADARB2-AS1A8MUL3 147 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 SERF1AO75920 110 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 SYNJ2BPP57105 145 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 FOXL1Q12952 345 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 VOPP1Q96AW1 172 aa13.96□□□□□ -0.17
PHRF1-202ENST00000413872 C1orf122Q6ZSJ8 110 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 WDR86Q86TI4 376 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 JKAMPQ9P055 326 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 KIAA2026Q5HYC2 2103 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 A0A0G2JRQ6 117 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 C17orf58Q2M2W7 97 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 DEFB121Q5J5C9 76 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 ARL6IP6Q8N6S5 226 aa13.96□□□□□ -0.18
PHRF1-202ENST00000413872 LINC01619G3V211 115 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 ADMP35318 185 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 C1orf147Q96MC9 270 aaPredicted RBP13.95□□□□□ -0.18
PHRF1-202ENST00000413872 DOCK7Q96N67 2140 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 NDUFA4L2Q9NRX3 87 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 TRBV24-1A0A075B6N3 115 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 ZNF503-AS2A6NEH8 195 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 Q6ZRM9 215 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 DPM2O94777 84 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 FAM19A2Q8N3H0 131 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 WFDC12Q8WWY7 111 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 TRGV1A0A0A0MS02 117 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 LINC00205P59089 165 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 DPH3P1Q9H4G8 78 aa13.95□□□□□ -0.18
PHRF1-202ENST00000413872 NDUFA3O95167 84 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 UBE2DNLQ8IWF7 75 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 REG4Q9BYZ8 158 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 TP53BP1Q12888 1972 aaPredicted RBP13.94□□□□□ -0.18
PHRF1-202ENST00000413872 TRAV12-3A0A0B4J271 114 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 C1orf194Q5T5A4 169 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 RNF138Q8WVD3 245 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 WNK2Q9Y3S1 2297 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.94□□□□□ -0.18
PHRF1-202ENST00000413872 RPL35AP18077 110 aaKnown RBP13.94□□□□□ -0.18
PHRF1-202ENST00000413872 PLP1P60201 277 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 LINC01551Q86U37 167 aa13.94□□□□□ -0.18
PHRF1-202ENST00000413872 SRSF3P84103 164 aaKnown RBP13.93□□□□□ -0.18
PHRF1-202ENST00000413872 SMPXQ9UHP9 88 aa13.93□□□□□ -0.18
PHRF1-202ENST00000413872 WISP1O95388 367 aa13.93□□□□□ -0.18
PHRF1-202ENST00000413872 WT1P19544 449 aaPredicted RBP13.93□□□□□ -0.18
PHRF1-202ENST00000413872 PCNX1Q96RV3 2341 aa13.93□□□□□ -0.18
PHRF1-202ENST00000413872 RNF182Q8N6D2 247 aa13.93□□□□□ -0.18
PHRF1-202ENST00000413872 MRPL16Q9NX20 251 aaKnown RBP13.93□□□□□ -0.18
PHRF1-202ENST00000413872 ZNF524Q96C55 264 aa13.93□□□□□ -0.18
PHRF1-202ENST00000413872 MCRIP2Q9BUT9 160 aaKnown RBP13.93□□□□□ -0.18
PHRF1-202ENST00000413872 RSPO1Q2MKA7 263 aaPredicted RBP13.92□□□□□ -0.18
PHRF1-202ENST00000413872 KLF2Q9Y5W3 355 aaPredicted RBP13.92□□□□□ -0.18
PHRF1-202ENST00000413872 MPDZO75970 2070 aa13.92□□□□□ -0.18
PHRF1-202ENST00000413872 SH2D1AO60880 128 aa13.92□□□□□ -0.18
PHRF1-202ENST00000413872 DMRTC2Q8IXT2 367 aaPredicted RBP13.92□□□□□ -0.18
PHRF1-202ENST00000413872 IGLV3-1P01715 115 aa13.92□□□□□ -0.18
PHRF1-202ENST00000413872 TRBV7-9A0A0J9YWB2 115 aa13.92□□□□□ -0.18
PHRF1-202ENST00000413872 SEC11AP67812 179 aa13.91□□□□□ -0.18
PHRF1-202ENST00000413872 LAGE3Q14657 143 aa13.91□□□□□ -0.18
PHRF1-202ENST00000413872 C1QL4Q86Z23 238 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 244.9 ms