RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 BAGE2Q86Y30 109 aa19.61■□□□□ 0.73
SHOX2-201ENST00000389589 MAPK1IP1LQ8NDC0 245 aa19.61■□□□□ 0.73
SHOX2-201ENST00000389589 SMIM12Q96EX1 92 aa19.61■□□□□ 0.73
SHOX2-201ENST00000389589 MS4A10Q96PG2 267 aa19.61■□□□□ 0.73
SHOX2-201ENST00000389589 POLQO75417 2590 aa19.61■□□□□ 0.73
SHOX2-201ENST00000389589 TRAV9-1A0A075B6T8 112 aa19.61■□□□□ 0.73
SHOX2-201ENST00000389589 PLA2G2AP14555 144 aa19.61■□□□□ 0.73
SHOX2-201ENST00000389589 J3QKU1 62 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 AP4M1O00189 453 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 BRI3O95415 125 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 TCRAP04437 139 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 MGST1P10620 155 aaKnown RBP19.6■□□□□ 0.73
SHOX2-201ENST00000389589 FMC1Q96HJ9 113 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 CCDC140Q96MF4 163 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 TRAV34A0A0B4J273 112 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 CMTM2Q8TAZ6 248 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 V9GYV3 84 aa19.6■□□□□ 0.73
SHOX2-201ENST00000389589 H3BUA1 57 aa19.59■□□□□ 0.73
SHOX2-201ENST00000389589 PDE6HQ13956 83 aa19.59■□□□□ 0.73
SHOX2-201ENST00000389589 BCL6BQ8N143 479 aaPredicted RBP19.59■□□□□ 0.73
SHOX2-201ENST00000389589 CSMD1Q96PZ7 3565 aa19.58■□□□□ 0.73
SHOX2-201ENST00000389589 CLEC19AQ6UXS0 136 aa19.58■□□□□ 0.73
SHOX2-201ENST00000389589 ZNF414Q96IQ9 312 aa19.58■□□□□ 0.73
SHOX2-201ENST00000389589 RPH3ALQ9UNE2 315 aa19.58■□□□□ 0.73
SHOX2-201ENST00000389589 SLC17A3O00476 420 aa19.58■□□□□ 0.72
SHOX2-201ENST00000389589 UBE2CO00762 179 aa19.58■□□□□ 0.72
SHOX2-201ENST00000389589 RPL7P18124 248 aaKnown RBP19.58■□□□□ 0.72
SHOX2-201ENST00000389589 RPEL1Q2QD12 228 aa19.58■□□□□ 0.72
SHOX2-201ENST00000389589 DEFB112Q30KQ8 113 aa19.58■□□□□ 0.72
SHOX2-201ENST00000389589 IBA57Q5T440 356 aaKnown RBP19.58■□□□□ 0.72
SHOX2-201ENST00000389589 TOMM20LQ6UXN7 152 aa19.57■□□□□ 0.72
SHOX2-201ENST00000389589 LINC00527Q9UJ94 153 aa19.57■□□□□ 0.72
SHOX2-201ENST00000389589 PHOX2AO14813 284 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BKO60814 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 TRGV3P03979 118 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BJP06899 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BOP23527 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BBP33778 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BDP58876 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BCP62807 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST2H2BEQ16778 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST2H2BFQ5QNW6 126 aaPredicted RBP19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BHQ93079 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 GPR82Q96P67 336 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BNQ99877 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 HIST1H2BMQ99879 126 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 RNASE7Q9H1E1 156 aaKnown RBP19.56■□□□□ 0.72
SHOX2-201ENST00000389589 CHD6Q8TD26 2715 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 CSPG4Q6UVK1 2322 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 PRRC2AP48634 2157 aaKnown RBP19.56■□□□□ 0.72
SHOX2-201ENST00000389589 NAV2Q8IVL1 2488 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 ZNF320A2RRD8 509 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 FSHBP01225 129 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 RAB9AP51151 201 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 SMUG1Q53HV7 270 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 SIGLEC15Q6ZMC9 328 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 FAM231DQ6ZW35 169 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 EXOC3-AS1Q8N2X6 119 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 FRZBQ92765 325 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 Q96MF0 132 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 ZFAND3Q9H8U3 227 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 GNB4Q9HAV0 340 aa19.56■□□□□ 0.72
SHOX2-201ENST00000389589 PPIFP30405 207 aaKnown RBP19.55■□□□□ 0.72
SHOX2-201ENST00000389589 RELQ04864 619 aaPredicted RBP19.55■□□□□ 0.72
SHOX2-201ENST00000389589 CELSR1Q9NYQ6 3014 aa19.55■□□□□ 0.72
SHOX2-201ENST00000389589 ABCA12Q86UK0 2595 aa19.55■□□□□ 0.72
SHOX2-201ENST00000389589 TRGC1P0CF51 173 aa19.55■□□□□ 0.72
SHOX2-201ENST00000389589 BLCAPP62952 87 aa19.55■□□□□ 0.72
SHOX2-201ENST00000389589 FABP9Q0Z7S8 132 aa19.55■□□□□ 0.72
SHOX2-201ENST00000389589 NHLRC2Q8NBF2 726 aa19.55■□□□□ 0.72
SHOX2-201ENST00000389589 C17orf77Q96MU5 243 aa19.55■□□□□ 0.72
SHOX2-201ENST00000389589 C9orf139Q6ZV77 190 aa19.54■□□□□ 0.72
SHOX2-201ENST00000389589 OR5R1Q8NH85 324 aa19.54■□□□□ 0.72
SHOX2-201ENST00000389589 ZNF580Q9UK33 172 aa19.54■□□□□ 0.72
SHOX2-201ENST00000389589 OR8I2Q8N0Y5 310 aa19.53■□□□□ 0.72
SHOX2-201ENST00000389589 USMG5Q96IX5 58 aa19.53■□□□□ 0.72
SHOX2-201ENST00000389589 LTAP01374 205 aa19.53■□□□□ 0.72
SHOX2-201ENST00000389589 IER3P46695 156 aa19.53■□□□□ 0.72
SHOX2-201ENST00000389589 PSG9Q00887 426 aa19.53■□□□□ 0.72
SHOX2-201ENST00000389589 AAMDCQ9H7C9 122 aa19.53■□□□□ 0.72
SHOX2-201ENST00000389589 DOPEY2Q9Y3R5 2298 aa19.52■□□□□ 0.72
SHOX2-201ENST00000389589 IGHV3-35A0A0C4DH35 117 aa19.52■□□□□ 0.72
SHOX2-201ENST00000389589 TRBV6-1A0A0K0K1D8 114 aa19.52■□□□□ 0.72
SHOX2-201ENST00000389589 IGHV4-59P01825 116 aa19.52■□□□□ 0.72
SHOX2-201ENST00000389589 TPPP2P59282 170 aa19.52■□□□□ 0.72
SHOX2-201ENST00000389589 MLST8Q9BVC4 326 aa19.52■□□□□ 0.72
SHOX2-201ENST00000389589 K7EQM0 130 aa19.52■□□□□ 0.71
SHOX2-201ENST00000389589 AKR1D1P51857 326 aa19.52■□□□□ 0.71
SHOX2-201ENST00000389589 NDUFA6P56556 154 aa19.52■□□□□ 0.71
SHOX2-201ENST00000389589 RPL19P84098 196 aaKnown RBP19.52■□□□□ 0.71
SHOX2-201ENST00000389589 ACTL10Q5JWF8 245 aa19.52■□□□□ 0.71
SHOX2-201ENST00000389589 KRTAP1-3Q8IUG1 177 aa19.52■□□□□ 0.71
SHOX2-201ENST00000389589 NOL4LQ96MY1 436 aaPredicted RBP19.52■□□□□ 0.71
SHOX2-201ENST00000389589 PSMG3-AS1Q96PY0 264 aa19.52■□□□□ 0.71
SHOX2-201ENST00000389589 CSMD2Q7Z408 3487 aa19.51■□□□□ 0.71
SHOX2-201ENST00000389589 CYB5R2Q6BCY4 276 aa19.51■□□□□ 0.71
SHOX2-201ENST00000389589 ZNF705GA8MUZ8 300 aaPredicted RBP19.5■□□□□ 0.71
SHOX2-201ENST00000389589 GOLT1AQ6ZVE7 132 aa19.5■□□□□ 0.71
SHOX2-201ENST00000389589 SERTAD4Q9NUC0 356 aa19.5■□□□□ 0.71
SHOX2-201ENST00000389589 TMEM75Q8N9X5 138 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms