RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 COTL1Q14019 142 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 C1orf194Q5T5A4 169 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 TIMD4Q96H15 378 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 VAMP8Q9BV40 100 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 TP73-AS1Q9UF72 201 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 UQCRFS1P47985 274 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 BAGE3Q86Y29 109 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 STXBP6Q8NFX7 210 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 AJUBAQ96IF1 538 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 C19orf84I3L1E1 186 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 LTAP01374 205 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 HOXB4P17483 251 aaPredicted RBP10.53□□□□□ -0.72
CCDC3-202ENST00000378839 PMCHP20382 165 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 HES1Q14469 280 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 C5orf64Q2M2E5 130 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 TCF24Q7RTU0 167 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 NEU4Q8WWR8 484 aaPredicted RBP10.53□□□□□ -0.72
CCDC3-202ENST00000378839 GRAMD2BQ96HH9 432 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 RASL11BQ9BPW5 248 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 SRIP30626 198 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 UNQ5815/PRO19632Q6UWF5 114 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 ZNF491Q8N8L2 437 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 GTSF1Q8WW33 167 aa10.53□□□□□ -0.72
CCDC3-202ENST00000378839 SSBP4Q9BWG4 385 aaPredicted RBP10.53□□□□□ -0.72
CCDC3-202ENST00000378839 OVOL3O00110 214 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 TOMM40O96008 361 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 Q8N6K4 173 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 GPR82Q96P67 336 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 C20orf202A1L168 122 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 HIGD1CA8MV81 97 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 MRPS12O15235 138 aaKnown RBP10.52□□□□□ -0.73
CCDC3-202ENST00000378839 EGR2P11161 476 aaPredicted RBP10.52□□□□□ -0.73
CCDC3-202ENST00000378839 GPR6P46095 362 aaPredicted RBP10.52□□□□□ -0.73
CCDC3-202ENST00000378839 UBE2G1P62253 170 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 FAM120AOSQ5T036 256 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 C5orf17Q8NAS9 161 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 PRSS22Q9GZN4 317 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 FBXL7Q9UJT9 491 aa10.52□□□□□ -0.73
CCDC3-202ENST00000378839 A0A1W2PS18 150 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 C19orf71A6NCJ1 209 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 M0QZ24 198 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 IGHV3-23P01764 117 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 WDR73Q6P4I2 378 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 CIARTQ8N365 385 aaPredicted RBP10.51□□□□□ -0.73
CCDC3-202ENST00000378839 STPG4Q8N801 248 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 Q8N976 141 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 NTF3P20783 257 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 TSKUQ8WUA8 353 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 SRSF8Q9BRL6 282 aaKnown RBP10.51□□□□□ -0.73
CCDC3-202ENST00000378839 TMEM14CQ9P0S9 112 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 IGLV11-55A0A075B6I3 123 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 APCSP02743 223 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 GPX1P07203 203 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 WIPF2Q8TF74 440 aaPredicted RBP10.51□□□□□ -0.73
CCDC3-202ENST00000378839 SHANK2-AS3Q9BTD1 123 aa10.51□□□□□ -0.73
CCDC3-202ENST00000378839 MT-ND6P03923 174 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 IGLC2P0DOY2 106 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 TPPP2P59282 170 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 MAJINQ3KP22 176 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 Q6ZN92 141 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 ZNF414Q96IQ9 312 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 SIRPDQ9H106 197 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 PPP1R14DQ9NXH3 145 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 H3BRN7 92 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 ZC2HC1AQ96GY0 325 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 CSMD2Q7Z408 3487 aa10.5□□□□□ -0.73
CCDC3-202ENST00000378839 A0A1B0GXF2 115 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 WI2-2373I1.2A0A1W2PRP0 233 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 NCBP2LA6PVI3 153 aaKnown RBP10.49□□□□□ -0.73
CCDC3-202ENST00000378839 CCL25O15444 150 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 IL4P05112 153 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 HIST1H1EP10412 219 aaKnown RBP10.49□□□□□ -0.73
CCDC3-202ENST00000378839 CEACAM3P40198 252 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 PAFAH1B2P68402 229 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 GOLT1AQ6ZVE7 132 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 UBTD1Q9HAC8 227 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 OTORQ9NRC9 128 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 TRBV19A0A075B6N1 114 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 NDUFB8O95169 186 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 HLA-DQA1P01909 254 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 OR10J3Q5JRS4 329 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 ZNF562Q6V9R5 426 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 Q86TA4 180 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 FAM19A2Q8N3H0 131 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 C18orf32Q8TCD1 76 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 FMC1Q96HJ9 113 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 VPS25Q9BRG1 176 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 TIMM8BQ9Y5J9 83 aaPredicted RBP10.49□□□□□ -0.73
CCDC3-202ENST00000378839 WNK2Q9Y3S1 2297 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 AKAP6Q13023 2319 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 ZNF253O75346 499 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 CAMPP49913 170 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 SIGLEC15Q6ZMC9 328 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 RNF125Q96EQ8 232 aa10.49□□□□□ -0.73
CCDC3-202ENST00000378839 ITLN2Q8WWU7 325 aaPredicted RBP10.48□□□□□ -0.73
CCDC3-202ENST00000378839 ARPC1AQ92747 370 aa10.48□□□□□ -0.73
CCDC3-202ENST00000378839 RPP21Q9H633 154 aaKnown RBP10.48□□□□□ -0.73
CCDC3-202ENST00000378839 ZNF331Q9NQX6 463 aaPredicted RBP10.48□□□□□ -0.73
CCDC3-202ENST00000378839 TBL2Q9Y4P3 447 aaKnown RBP10.48□□□□□ -0.73
CCDC3-202ENST00000378839 FCGR2BP31994 310 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms