RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 GAGE2AQ6NT46 116 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 GGTLC1Q9BX51 225 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 IGKV1-27A0A075B6S5 117 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 A0A096LPF7 62 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 DEFB131AP59861 70 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 MLANAQ16655 118 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 GGNQ86UU5 652 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 RHPN1-AS1Q9BWJ2 59 aa10.32□□□□□ -0.76
SDC3-201ENST00000336798 LOC102723996A0A087X1L8 192 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 BCL6BQ8N143 479 aaPredicted RBP10.31□□□□□ -0.76
SDC3-201ENST00000336798 POLR3KQ9Y2Y1 108 aaPredicted RBP10.31□□□□□ -0.76
SDC3-201ENST00000336798 Q0VFX4 171 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 SS18Q15532 418 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 CACNA1IQ9P0X4 2223 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 C5orf63A6NC05 138 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 BUB1B-PAK6H3BSN5 160 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 OVOL3O00110 214 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 BTCP35070 178 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 GUSBP1Q15486 140 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 KLK9Q9UKQ9 250 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 GAGE12JA6NER3 117 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 EFNA2O43921 213 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 GAGE4Q13068 117 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 GAGE5Q13069 117 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 LY6G6FQ5SQ64 297 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 TRBV7-1A0A0A6YYK4 115 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 SP5Q6BEB4 398 aaPredicted RBP10.31□□□□□ -0.76
SDC3-201ENST00000336798 IL17RELQ6ZVW7 336 aa10.31□□□□□ -0.76
SDC3-201ENST00000336798 LEPROTO15243 131 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 IGLV3-19P01714 112 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 PRR30Q53SZ7 412 aaPredicted RBP10.3□□□□□ -0.76
SDC3-201ENST00000336798 TMEM158Q8WZ71 300 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 IGLV3-12A0A075B6K2 115 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 CEACAM8P31997 349 aaPredicted RBP10.3□□□□□ -0.76
SDC3-201ENST00000336798 PRIMA1Q86XR5 153 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 LINC01356Q8N9X3 169 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 RTTNQ86VV8 2226 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 COL24A1Q17RW2 1714 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 H0YJW9 148 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 SAA4P35542 130 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 GAFA1Q96PS6 74 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 ZNF581Q9P0T4 197 aa10.3□□□□□ -0.76
SDC3-201ENST00000336798 TNS1Q9HBL0 1735 aaKnown RBP10.3□□□□□ -0.76
SDC3-201ENST00000336798 CMC4P56277 68 aaPredicted RBP10.3□□□□□ -0.76
SDC3-201ENST00000336798 SMIM20Q8N5G0 67 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 C1orf43Q9BWL3 253 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 WDR83OSQ9Y284 106 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 FGF16O43320 207 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 C5orf64Q2M2E5 130 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 PFN2P35080 140 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 ANXA2RQ3ZCQ2 193 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 SLC25A48Q6ZT89 311 aaKnown RBP10.29□□□□□ -0.76
SDC3-201ENST00000336798 FLVCR1-AS1Q8TAF5 88 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 Q96MF0 132 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 GFI1Q99684 422 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 KIR3DS1Q14943 382 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 CHD5Q8TDI0 1954 aa10.29□□□□□ -0.76
SDC3-201ENST00000336798 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.28□□□□□ -0.76
SDC3-201ENST00000336798 MBD3L4A6NDZ8 208 aaPredicted RBP10.28□□□□□ -0.76
SDC3-201ENST00000336798 MBD3L3A6NE82 208 aaPredicted RBP10.28□□□□□ -0.76
SDC3-201ENST00000336798 MBD3L5A6NJ08 208 aaPredicted RBP10.28□□□□□ -0.76
SDC3-201ENST00000336798 SRRM5B3KS81 715 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 PSG3Q16557 428 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 C20orf204Q6ZNR8 217 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 MBD3L2Q8NHZ7 208 aaPredicted RBP10.28□□□□□ -0.76
SDC3-201ENST00000336798 RNF166Q96A37 237 aaPredicted RBP10.28□□□□□ -0.76
SDC3-201ENST00000336798 AHCTF1Q8WYP5 2266 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 COL5A3P25940 1745 aaPredicted RBP10.28□□□□□ -0.76
SDC3-201ENST00000336798 IGHV3-38A0A0C4DH36 116 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 ZNF561-AS1K7EIQ3 104 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 VCYO14598 125 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 CLPSP04118 112 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 ID3Q02535 119 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 RNF144BQ7Z419 303 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 IL18BPO95998 194 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 NUP35Q8NFH5 326 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 CRYGSP22914 178 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 SPINK13Q1W4C9 94 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 FAM90A2PQ658T7 463 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 AMN1Q8IY45 258 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 PLEKHB2Q96CS7 222 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 LINC00473A8K010 186 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 B5MCH6 92 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 LHBP01229 141 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 DAD1P61803 113 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 Q8NFD4 153 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 TIMM21Q9BVV7 248 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 TMEM126AQ9H061 195 aa10.28□□□□□ -0.76
SDC3-201ENST00000336798 DTX1Q86Y01 620 aa10.27□□□□□ -0.76
SDC3-201ENST00000336798 KLHDC3Q9BQ90 382 aa10.27□□□□□ -0.76
SDC3-201ENST00000336798 AGMATQ9BSE5 352 aa10.27□□□□□ -0.76
SDC3-201ENST00000336798 RNF114Q9Y508 228 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 NTN3O00634 580 aaPredicted RBP10.27□□□□□ -0.77
SDC3-201ENST00000336798 CLPSL2Q6UWE3 100 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 TMEM256Q8N2U0 113 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 FAM231BA6NCW3 169 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 LYPD3O95274 346 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 MINOS1Q5TGZ0 78 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 MINOS1-NBL1R4GNA1 71 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 CD5P06127 495 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms