RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 A0A1B0GWB2 263 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 M0R1W7 72 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 SRP19P09132 144 aaKnown RBP6.3□□□□□ -1.4
SCN9A-201ENST00000303354 ARTNQ5T4W7 220 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 TREML4Q6UXN2 200 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 NIT1Q86X76 327 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 LIME1Q9H400 295 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 TEX36Q5VZQ5 186 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 ZNRF2Q8NHG8 242 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 PNRC2Q9NPJ4 139 aaKnown RBP6.3□□□□□ -1.4
SCN9A-201ENST00000303354 XIRP1Q702N8 1843 aaKnown RBP6.3□□□□□ -1.4
SCN9A-201ENST00000303354 HLA-DMBP28068 263 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 RPP25LQ8N5L8 163 aaKnown RBP6.3□□□□□ -1.4
SCN9A-201ENST00000303354 COPS9Q8WXC6 57 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV2-70DA0A0C4DH43 119 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 A0A0G2JRQ6 117 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 A0A1B0GWJ7 208 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 HIST1H4AP62805 103 aaKnown RBP6.3□□□□□ -1.4
SCN9A-201ENST00000303354 Q6P435 159 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 C10orf126Q8N4M7 172 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 CYSLTR1Q9Y271 337 aa6.3□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV3-30P01768 117 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV3-33P01772 117 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV3-30-3P0DP02 117 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV3-30-5P0DP03 117 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 DKK4Q9UBT3 224 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 ZNF114Q8NC26 417 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 DNAJC13O75165 2243 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 IGHG3P01860 377 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 PROP1O75360 226 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 MMP23AO75900 390 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 WFDC11Q8NEX6 87 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 SERF1AO75920 110 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 PLA2G2CQ5R387 149 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 NOP10Q9NPE3 64 aaKnown RBP6.29□□□□□ -1.4
SCN9A-201ENST00000303354 RBBP6Q7Z6E9 1792 aaKnown RBP6.29□□□□□ -1.4
SCN9A-201ENST00000303354 SS18Q15532 418 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 Q6ZR03 302 aa6.29□□□□□ -1.4
SCN9A-201ENST00000303354 TRAV8-2A0A0B4J237 113 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 H3BUT2 72 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 C17orf82Q86X59 251 aaPredicted RBP6.28□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV4-61A0A0C4DH41 118 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 NBL1P41271 181 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 TMEM155Q4W5P6 130 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 GGTLC1Q9BX51 225 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 NYNRINQ9P2P1 1898 aaKnown RBP6.28□□□□□ -1.4
SCN9A-201ENST00000303354 IGLV3-32A0A0A0MS00 114 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 TRAV25A0A0B4J276 109 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 EREGO14944 169 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 TNFSF13O75888 250 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 HOXB4P17483 251 aaPredicted RBP6.28□□□□□ -1.4
SCN9A-201ENST00000303354 IGKCP01834 107 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 WISP2O76076 250 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 TOMM40O96008 361 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 A0A0G2JMZ2 1700 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 LRRC37A2A6NM11 1700 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 FAM223BA6NKX1 122 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 A8MXK9 166 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 CCL24O00175 119 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 FAM223AQ8IWN6 122 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 UQCR10Q9UDW1 63 aa6.28□□□□□ -1.4
SCN9A-201ENST00000303354 ANGP03950 147 aaKnown RBP6.28□□□□□ -1.4
SCN9A-201ENST00000303354 DAZ1Q9NQZ3 744 aaKnown RBP6.28□□□□□ -1.4
SCN9A-201ENST00000303354 RNF222A6NCQ9 220 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 CCDC88CQ9P219 2028 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 LOC285556D6RIA3 1793 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 H0YIZ8 118 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 TEX43Q6ZNM6 134 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 C5orf30Q96GV9 206 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 GGACTQ9BVM4 153 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 EDA2RQ9HAV5 297 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 SCN10AQ9Y5Y9 1956 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 ARMS2P0C7Q2 107 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 AMN1Q8IY45 258 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 ZNF524Q96C55 264 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 PRTN3P24158 256 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 SUMO4Q6EEV6 95 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 TMEM86BQ8N661 226 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 A0A1B0GV90 55 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 RPL32P62910 135 aaKnown RBP6.27□□□□□ -1.41
SCN9A-201ENST00000303354 BCL6BQ8N143 479 aaPredicted RBP6.27□□□□□ -1.41
SCN9A-201ENST00000303354 MS4A6AQ9H2W1 248 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 PROK2Q9HC23 129 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 A0A1W2PPI3 338 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 WNK3Q9BYP7 1800 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 TMEM256Q8N2U0 113 aa6.27□□□□□ -1.41
SCN9A-201ENST00000303354 TMEM213A2RRL7 107 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 TNFRSF14Q92956 283 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 NDUFS8O00217 210 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 APOC4P55056 127 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 PSMG3Q9BT73 122 aaPredicted RBP6.26□□□□□ -1.41
SCN9A-201ENST00000303354 TRPM7Q96QT4 1865 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 DPM2O94777 84 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 LAGE3Q14657 143 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 PSG3Q16557 428 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 hDV102S1A0JD36 115 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 USMG5Q96IX5 58 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 ANKRD36A6QL64 1941 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 SIPA1L1O43166 1804 aa6.26□□□□□ -1.41
SCN9A-201ENST00000303354 A0A1B0GUS0 222 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms