RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 FOXA2Q9Y261 457 aaPredicted RBP8.21□□□□□ -1.09
CLDN1-201ENST00000295522 CNOT1A5YKK6 2376 aaKnown RBP8.21□□□□□ -1.1
CLDN1-201ENST00000295522 TMEM213A2RRL7 107 aa8.21□□□□□ -1.1
CLDN1-201ENST00000295522 PRCDQ00LT1 54 aa8.21□□□□□ -1.1
CLDN1-201ENST00000295522 OR5AN1Q8NGI8 311 aa8.21□□□□□ -1.1
CLDN1-201ENST00000295522 SIGLEC8Q9NYZ4 499 aa8.21□□□□□ -1.1
CLDN1-201ENST00000295522 JPT1Q9UK76 154 aa8.21□□□□□ -1.1
CLDN1-201ENST00000295522 AGRNO00468 2067 aa8.21□□□□□ -1.1
CLDN1-201ENST00000295522 B5MCH6 92 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 ENSAO43768 121 aaKnown RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 HBDP02042 147 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 SAA1P0DJI8 122 aaPredicted RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 KIR2DS2P43631 304 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 MBNL2Q5VZF2 373 aaKnown RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 PATE2Q6UY27 113 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 RPRMLQ8N4K4 120 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 FAM222BQ8WU58 562 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 GLMPQ8WWB7 406 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 LINC00470Q9BZP3 86 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 CXXC4Q9H2H0 198 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 MRPL16Q9NX20 251 aaKnown RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 SMPXQ9UHP9 88 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 NCKAP5O14513 1909 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 TTC28Q96AY4 2481 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 EP300Q09472 2414 aaPredicted RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 SRRM4A7MD48 611 aaKnown RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 C15orf65H3BRN8 121 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 TCRAP04437 139 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 CT45A10P0DMU9 189 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 RNASE2P10153 161 aaKnown RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 RNF183Q96D59 192 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 ABHD17AQ96GS6 310 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 SOX21Q9Y651 276 aaPredicted RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 COL5A1P20908 1838 aaPredicted RBP8.2□□□□□ -1.1
CLDN1-201ENST00000295522 IGKV2D-26A0A0A0MRZ7 120 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 FAM90A9PA6NNJ1 464 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 FOXC2Q99958 501 aa8.2□□□□□ -1.1
CLDN1-201ENST00000295522 CACNA1BQ00975 2339 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 TCRBV4S1A1TA0A5B7 111 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 PRR33A8MZF0 331 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 MT-ATP8P03928 68 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 CFAP161Q6P656 301 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 TMEM178AQ8NBL3 297 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 F8W1H4 67 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 UPK2O00526 184 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 SPRY3O43610 288 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 SCGB2A1O75556 95 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 EVI2AP22794 236 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 TWIST1Q15672 202 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 ZC2HC1BQ5TFG8 222 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 MOGAT3Q86VF5 341 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 FMC1Q96HJ9 113 aa8.19□□□□□ -1.1
CLDN1-201ENST00000295522 ZNF766Q5HY98 468 aa8.18□□□□□ -1.1
CLDN1-201ENST00000295522 DUSP23Q9BVJ7 150 aa8.18□□□□□ -1.1
CLDN1-201ENST00000295522 MRPL36Q9P0J6 103 aaKnown RBP8.18□□□□□ -1.1
CLDN1-201ENST00000295522 IGHV3-72A0A0B4J1Y9 119 aa8.18□□□□□ -1.1
CLDN1-201ENST00000295522 ORMDL3Q8N138 153 aa8.18□□□□□ -1.1
CLDN1-201ENST00000295522 CYSLTR1Q9Y271 337 aa8.18□□□□□ -1.1
CLDN1-201ENST00000295522 IGLL5B9A064 214 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 SS18L1O75177 396 aaPredicted RBP8.17□□□□□ -1.1
CLDN1-201ENST00000295522 PSMB2P49721 201 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 LGALS9BQ3B8N2 356 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 LGALS9CQ6DKI2 356 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 DUX4L9Q6RFH8 374 aaPredicted RBP8.17□□□□□ -1.1
CLDN1-201ENST00000295522 OR1L8Q8NGR8 309 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 PTH2Q96A98 100 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 TRBV25-1A0A075B6N4 114 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 E7EUB6 86 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 RBP4P02753 201 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 SUB1P53999 127 aaKnown RBP eCLIP8.17□□□□□ -1.1
CLDN1-201ENST00000295522 Q0VFX4 171 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 FOXI2Q6ZQN5 318 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 C8orf86Q6ZUL3 223 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 DMDP11532 3685 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 MED13Q9UHV7 2174 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 TNFRSF1AP19438 455 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 LEPP41159 167 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 C2orf83Q53S99 150 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 C11orf53Q8IXP5 236 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 UFC1Q9Y3C8 167 aa8.17□□□□□ -1.1
CLDN1-201ENST00000295522 IGKV1D-17A0A075B6S4 117 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 IGKV3D-15A0A087WSY6 115 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 HAX1O00165 279 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 NDUFS7O75251 213 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 LYZL1Q6UWQ5 148 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 SLC25A48Q6ZT89 311 aaKnown RBP8.16□□□□□ -1.1
CLDN1-201ENST00000295522 Q86TA4 180 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 C7orf69Q9H7B7 122 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 NDUFA3O95167 84 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 TTC9CQ8N5M4 171 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 TTTY12Q9BZ98 90 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 KLK15Q9H2R5 256 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 LOXL3P58215 753 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 PIP4P2Q8N4L2 257 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 OSR1Q8TAX0 266 aaPredicted RBP8.16□□□□□ -1.1
CLDN1-201ENST00000295522 FER1L6-AS2Q96M78 137 aa8.16□□□□□ -1.1
CLDN1-201ENST00000295522 ZFHX4Q86UP3 3567 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 ADAMTS20P59510 1910 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 IQCF6A8MYZ5 107 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 M0R3E3 92 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms