RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 IGKV1-16P04430 117 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 RPL15P61313 204 aaKnown RBP8.77□□□□□ -1.01
CD44-201ENST00000263398 ERVK11-1P61568 191 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 KLF17Q5JT82 389 aaPredicted RBP8.77□□□□□ -1.01
CD44-201ENST00000263398 ZNF474Q6S9Z5 364 aaPredicted RBP8.77□□□□□ -1.01
CD44-201ENST00000263398 LYZL1Q6UWQ5 148 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 SLC25A2Q9BXI2 301 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 TRAV40A0A0B4J280 105 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 TOMM7Q9P0U1 55 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 MALRD1Q5VYJ5 2156 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 TRGV2A0A075B6R0 118 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 BUB1B-PAK6H3BSN5 160 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 WISP1O95388 367 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 PFN1P07737 140 aaKnown RBP8.76□□□□□ -1.01
CD44-201ENST00000263398 CNTFRP26992 372 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 EFNA4P52798 201 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 ZNF524Q96C55 264 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 MEGF9Q9H1U4 602 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 CRIM1Q9NZV1 1036 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 LINC00527Q9UJ94 153 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 CHTOPQ9Y3Y2 248 aaKnown RBP8.76□□□□□ -1.01
CD44-201ENST00000263398 GTF3C1Q12789 2109 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 ZNF124Q15973 351 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 LCN12Q6JVE5 192 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 RPRMLQ8N4K4 120 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 TRAV8-1A0A0A6YYK1 113 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 A0A0G2JNJ9 132 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 ZNF815PA8K554 130 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 ZNF138P52744 262 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 PAX9P55771 341 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 MLANAQ16655 118 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 Q9UFV3 132 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 M0R1W7 72 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 NCR2O95944 276 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 C9orf139Q6ZV77 190 aa8.76□□□□□ -1.01
CD44-201ENST00000263398 LAGE3Q14657 143 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 TRGV11A0A075B6L2 103 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 TOMM40O96008 361 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 PLNP26678 52 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 ZNF664Q8N3J9 261 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 ZNF479Q96JC4 524 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 LIME1Q9H400 295 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 SMAD7O15105 426 aaKnown RBP8.75□□□□□ -1.01
CD44-201ENST00000263398 HOXA3O43365 443 aaPredicted RBP8.75□□□□□ -1.01
CD44-201ENST00000263398 CD33P20138 364 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 KLRD1Q13241 179 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 PSG3Q16557 428 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 RNF182Q8N6D2 247 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 YLPM1P49750 1951 aaKnown RBP8.75□□□□□ -1.01
CD44-201ENST00000263398 DLEU1O43261 78 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 TSPAN13O95857 204 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 SFTA2Q6UW10 78 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 SRSF8Q9BRL6 282 aaKnown RBP8.75□□□□□ -1.01
CD44-201ENST00000263398 PROK2Q9HC23 129 aa8.75□□□□□ -1.01
CD44-201ENST00000263398 SYS1-DBNDD2H3BUS1 97 aa8.74□□□□□ -1.01
CD44-201ENST00000263398 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.74□□□□□ -1.01
CD44-201ENST00000263398 PRB4P10163 310 aaPredicted RBP8.74□□□□□ -1.01
CD44-201ENST00000263398 VDAC2P45880 294 aaPredicted RBP8.74□□□□□ -1.01
CD44-201ENST00000263398 RSPO1Q2MKA7 263 aaPredicted RBP8.74□□□□□ -1.01
CD44-201ENST00000263398 TRBV7-9A0A0J9YWB2 115 aa8.74□□□□□ -1.01
CD44-201ENST00000263398 A6NNC1 897 aa8.74□□□□□ -1.01
CD44-201ENST00000263398 Q0VG73 95 aa8.74□□□□□ -1.01
CD44-201ENST00000263398 C10orf126Q8N4M7 172 aa8.74□□□□□ -1.01
CD44-201ENST00000263398 TMEM14BQ9NUH8 114 aa8.74□□□□□ -1.01
CD44-201ENST00000263398 HELZP42694 1942 aaKnown RBP8.73□□□□□ -1.01
CD44-201ENST00000263398 CD300EQ496F6 205 aaPredicted RBP8.73□□□□□ -1.01
CD44-201ENST00000263398 STHQ8IWL8 128 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 NCOR1P1Q9H4R4 102 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 A0A1W2PPI3 338 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 SH2D1AO60880 128 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 LYPD2Q6UXB3 125 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 MRPL52Q86TS9 123 aaKnown RBP8.73□□□□□ -1.01
CD44-201ENST00000263398 LINC00479Q96M42 142 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 PLXND1Q9Y4D7 1925 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 PDE6HQ13956 83 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 GUSBP1Q15486 140 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 ZNF329Q86UD4 541 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 Q8TAT8 98 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 LINC00477Q96M19 166 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 TRBV7-1A0A0A6YYK4 115 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 CD28P10747 220 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 SAMD5Q5TGI4 173 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 TMEM219Q86XT9 240 aa8.73□□□□□ -1.01
CD44-201ENST00000263398 DMRTC2Q8IXT2 367 aaPredicted RBP8.73□□□□□ -1.01
CD44-201ENST00000263398 TANC1Q9C0D5 1861 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 TRAV8-2A0A0B4J237 113 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 hDV102S1A0JD36 115 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 IGKV1-39P01597 117 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 IGKV1D-39P04432 117 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 YAE1D1Q9NRH1 226 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 PCNX2A6NKB5 2137 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 PRTN3P24158 256 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 SRSF6Q13247 344 aaKnown RBP8.72□□□□□ -1.01
CD44-201ENST00000263398 PRR31Q5SQ13 230 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 C10orf91Q5T1B1 145 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 Q86TA4 180 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 TRAV2A0A0B4J234 112 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 SRRM4A7MD48 611 aaKnown RBP8.72□□□□□ -1.01
CD44-201ENST00000263398 SRD5A1P18405 259 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 MPV17L2Q567V2 206 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms