RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CRYGCP07315 174 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 TNFRSF1AP19438 455 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 MPV17L2Q567V2 206 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 THAP8Q8NA92 274 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 TMEM116Q8NCL8 245 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 OR8B3Q8NGG8 313 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 TMEM133Q9H2Q1 129 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 IGLC1P0CG04 106 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 UBE2G1P62253 170 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 CACNG8Q8WXS5 425 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 TRAV9-1A0A075B6T8 112 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 IGLV1-47P01700 117 aa8.45□□□□□ -1.06
USP28-201ENST00000003302 SETD2Q9BYW2 2564 aaPredicted RBP8.44□□□□□ -1.06
USP28-201ENST00000003302 RBP4P02753 201 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 HNRNPA3P51991 378 aaKnown RBP8.44□□□□□ -1.06
USP28-201ENST00000003302 ZNF575Q86XF7 245 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 WFDC3Q8IUB2 231 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 OR4B1Q8NGF8 309 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 NDPQ00604 133 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 IGFL3Q6UXB1 125 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 DYNAPQ8N1N2 210 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 LOC105371242A0A075B767 164 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 IGHV1-3A0A0C4DH29 117 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 NDUFB3O43676 98 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 MT-ND6P03923 174 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 CRYGBP07316 175 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 WDR73Q6P4I2 378 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 GRAMD2BQ96HH9 432 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 GPR82Q96P67 336 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 ARL2-SNX15V9GYD0 113 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 TRBV9A0A0B4J1U6 114 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 LTAP01374 205 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 TNFSF4P23510 183 aa8.44□□□□□ -1.06
USP28-201ENST00000003302 MRPL32Q9BYC8 188 aaKnown RBP8.44□□□□□ -1.06
USP28-201ENST00000003302 TLN2Q9Y4G6 2542 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 NAA38Q9BRA0 125 aaKnown RBP8.43□□□□□ -1.06
USP28-201ENST00000003302 SLC25A39Q9BZJ4 359 aaPredicted RBP8.43□□□□□ -1.06
USP28-201ENST00000003302 NCOR1P1Q9H4R4 102 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 MYO18BQ8IUG5 2567 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 SMKR1H3BMG3 65 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 RPL27AP46776 148 aaKnown RBP8.43□□□□□ -1.06
USP28-201ENST00000003302 PPP1R27Q86WC6 154 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 NUP37Q8NFH4 326 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 Q8TAT8 98 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 SRSF12Q8WXF0 261 aaKnown RBP8.43□□□□□ -1.06
USP28-201ENST00000003302 BORCS7Q96B45 105 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 TMUB1Q9BVT8 246 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 RPP21Q9H633 154 aaKnown RBP8.43□□□□□ -1.06
USP28-201ENST00000003302 CHODLQ9H9P2 273 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 SSUH2Q9Y2M2 353 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.43□□□□□ -1.06
USP28-201ENST00000003302 TMEM213A2RRL7 107 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 NKX6-3A6NJ46 265 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 FAM231DQ6ZW35 169 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 KLF12Q9Y4X4 402 aa8.43□□□□□ -1.06
USP28-201ENST00000003302 A0A087X0K7 114 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 OR4C46A6NHA9 309 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 NDUFS7O75251 213 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 FOSL1P15407 271 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 UQCR10Q9UDW1 63 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 A0A096LNJ9 63 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 I3L2K1 104 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 K7EIM0 57 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 TIMM23O14925 209 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 TCF15Q12870 199 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 Q86TA4 180 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 ZFP30Q9Y2G7 519 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 IGHV3OR16-13A0A075B7E8 117 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 IGHV3-74A0A0B4J1X5 117 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 ARF6P62330 175 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 WIPF2Q8TF74 440 aaPredicted RBP8.42□□□□□ -1.06
USP28-201ENST00000003302 INSIG2Q9Y5U4 225 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 CACNA1AO00555 2505 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 LOC389332A0A1B0GUA5 103 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 LRRC10Q5BKY1 277 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 DYNLRB1Q9NP97 96 aa8.42□□□□□ -1.06
USP28-201ENST00000003302 OR2J3O76001 311 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 P01737 135 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 COL5A1-AS1Q5SY13 56 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 MSRB1Q9NZV6 116 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 IGHV1-69-2A0A0G2JMI3 117 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 F8W735 103 aaPredicted RBP8.41□□□□□ -1.06
USP28-201ENST00000003302 BUB1B-PAK6H3BSN5 160 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 SPRY2O43597 315 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 COL8A1P27658 744 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 HBBP68871 147 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 ZNF596Q8TC21 504 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 TMEM186Q96B77 213 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 RNF24Q9Y225 148 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 MEF2CQ06413 473 aaPredicted RBP8.41□□□□□ -1.06
USP28-201ENST00000003302 OR2T8A6NH00 312 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 K7EMI3 77 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 GFRALQ6UXV0 394 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 NEU4Q8WWR8 484 aaPredicted RBP8.41□□□□□ -1.06
USP28-201ENST00000003302 TTTY13Q9BZ97 58 aa8.41□□□□□ -1.06
USP28-201ENST00000003302 F11RQ9Y624 299 aaKnown RBP8.41□□□□□ -1.06
USP28-201ENST00000003302 PKD1L2Q7Z442 2459 aa8.4□□□□□ -1.06
USP28-201ENST00000003302 HIST1H1EP10412 219 aaKnown RBP8.4□□□□□ -1.06
USP28-201ENST00000003302 ZNF80P51504 273 aaPredicted RBP8.4□□□□□ -1.06
USP28-201ENST00000003302 TRAV9-2A0A087WT02 112 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms