RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	BUD8	P41698	603 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	MPS3	P47069	682 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	YFT2	Q06676	274 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	SUT2	Q12286	268 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	GLN4	P13188	809 aa	Known RBP	5.93	□□□□□ -1.46
RRP40	YOL142W	GFA1	P14742	717 aa	Known RBP	5.93	□□□□□ -1.46
RRP40	YOL142W	DMC1	P25453	334 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	TAF5	P38129	798 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	DUN1	P39009	513 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	YEN1	P40028	759 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	PXA1	P41909	870 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	IES1	P43579	692 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	YGR151C	P53287	111 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	PTA1	Q01329	785 aa	Predicted RBP	5.93	□□□□□ -1.46
RRP40	YOL142W	FKS3	Q04952	1785 aa		5.93	□□□□□ -1.46
RRP40	YOL142W	PRP22	P24384	1145 aa	Known RBP	5.92	□□□□□ -1.46
RRP40	YOL142W	TAH11	P47112	604 aa		5.92	□□□□□ -1.46
RRP40	YOL142W	YDL086W	Q07505	273 aa		5.92	□□□□□ -1.46
RRP40	YOL142W	URB1	P34241	1764 aa	Known RBP	5.92	□□□□□ -1.46
RRP40	YOL142W	ABF1	P14164	731 aa		5.91	□□□□□ -1.46
RRP40	YOL142W	HCA4	P20448	770 aa	Known RBP	5.91	□□□□□ -1.46
RRP40	YOL142W	FUB1	P25659	250 aa		5.91	□□□□□ -1.46
RRP40	YOL142W	MSS1	P32559	526 aa	Predicted RBP	5.91	□□□□□ -1.46
RRP40	YOL142W	GRX4	P32642	244 aa		5.91	□□□□□ -1.46
RRP40	YOL142W	CTP1	P38152	299 aa		5.91	□□□□□ -1.46
RRP40	YOL142W	YHR097C	P38809	366 aa	Known RBP	5.91	□□□□□ -1.46
RRP40	YOL142W	KHA1	P40309	873 aa		5.91	□□□□□ -1.46
RRP40	YOL142W	YRF1-3	P0CX14	1859 aa		5.9	□□□□□ -1.46
RRP40	YOL142W	YRF1-7	P0CX15	1859 aa		5.9	□□□□□ -1.46
RRP40	YOL142W	YRF1-6	P53819	1859 aa		5.9	□□□□□ -1.46
RRP40	YOL142W	VID28	P40547	921 aa		5.9	□□□□□ -1.46
RRP40	YOL142W	SPO1	P53541	631 aa		5.9	□□□□□ -1.46
RRP40	YOL142W	PPN1	Q04119	674 aa		5.9	□□□□□ -1.46
RRP40	YOL142W	CDC26	P14724	124 aa		5.89	□□□□□ -1.47
RRP40	YOL142W	NTH1	P32356	751 aa		5.89	□□□□□ -1.47
RRP40	YOL142W	GMH1	P36125	273 aa		5.89	□□□□□ -1.47
RRP40	YOL142W	KSP1	P38691	1029 aa	Known RBP	5.89	□□□□□ -1.47
RRP40	YOL142W	TAF4	P50105	388 aa		5.89	□□□□□ -1.47
RRP40	YOL142W	YSH1	Q06224	779 aa	Predicted RBP	5.89	□□□□□ -1.47
RRP40	YOL142W	PSK1	P31374	1356 aa		5.89	□□□□□ -1.47
RRP40	YOL142W	PRE4	P30657	266 aa		5.88	□□□□□ -1.47
RRP40	YOL142W	DAL3	P32459	195 aa		5.88	□□□□□ -1.47
RRP40	YOL142W	DUG1	P43616	481 aa	Known RBP	5.88	□□□□□ -1.47
RRP40	YOL142W	NSE5	Q03718	556 aa		5.88	□□□□□ -1.47
RRP40	YOL142W	ADE6	P38972	1358 aa	Known RBP	5.88	□□□□□ -1.47
RRP40	YOL142W	SPE2	P21182	396 aa		5.87	□□□□□ -1.47
RRP40	YOL142W	EUG1	P32474	517 aa		5.87	□□□□□ -1.47
RRP40	YOL142W	EMP70	P32802	667 aa		5.87	□□□□□ -1.47
RRP40	YOL142W	YIL166C	P40445	542 aa		5.87	□□□□□ -1.47
RRP40	YOL142W	NMA2	P53204	395 aa		5.87	□□□□□ -1.47
RRP40	YOL142W	IZH3	Q07959	543 aa		5.87	□□□□□ -1.47
RRP40	YOL142W	APC1	P53886	1748 aa		5.87	□□□□□ -1.47
RRP40	YOL142W	YML133C	Q03099	1374 aa		5.86	□□□□□ -1.47
RRP40	YOL142W	YLL067C	Q07888	1374 aa		5.86	□□□□□ -1.47
RRP40	YOL142W	YLL066C	Q99208	1374 aa		5.86	□□□□□ -1.47
RRP40	YOL142W	TSR4	P25040	408 aa		5.86	□□□□□ -1.47
RRP40	YOL142W	SER1	P33330	395 aa	Known RBP	5.86	□□□□□ -1.47
RRP40	YOL142W	GPP2	P40106	250 aa	Known RBP	5.86	□□□□□ -1.47
RRP40	YOL142W	BMS1	Q08965	1183 aa	Known RBP	5.86	□□□□□ -1.47
RRP40	YOL142W	RKI1	Q12189	258 aa		5.86	□□□□□ -1.47
RRP40	YOL142W	RMP1	Q12530	201 aa		5.86	□□□□□ -1.47
RRP40	YOL142W	LAM4	P38800	1345 aa		5.85	□□□□□ -1.47
RRP40	YOL142W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	5.85	□□□□□ -1.47	not detected
RRP40	YOL142W	KCC4	P25389	1037 aa		5.85	□□□□□ -1.47
RRP40	YOL142W	MF(ALPHA)2	P32435	120 aa		5.85	□□□□□ -1.47
RRP40	YOL142W	RNR4	P49723	345 aa	Known RBP	5.85	□□□□□ -1.47
RRP40	YOL142W	DIP5	P53388	608 aa		5.85	□□□□□ -1.47
RRP40	YOL142W	SPC98	P53540	846 aa		5.85	□□□□□ -1.47
RRP40	YOL142W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.85	□□□□□ -1.47	not detected
RRP40	YOL142W	PPZ2	P33329	710 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	ELF1	P36053	145 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	APL3	P38065	1025 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	CDS1	P38221	457 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	YHR033W	P38690	423 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	CRG1	P38892	291 aa	RIP-Chip data	5.84	□□□□□ -1.47	not detected
RRP40	YOL142W	TMN3	P40071	706 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	FTR1	P40088	404 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	PRM2	P40534	656 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	SNF12	P53628	566 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	FDC1	Q03034	503 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	SKY1	Q03656	742 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	YPR027C	Q12079	277 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	TMA17	Q12513	150 aa		5.84	□□□□□ -1.47
RRP40	YOL142W	TUP1	P16649	713 aa		5.83	□□□□□ -1.48
RRP40	YOL142W	ATP12	P22135	325 aa		5.83	□□□□□ -1.48
RRP40	YOL142W	YEL020C	P39994	560 aa		5.83	□□□□□ -1.48
RRP40	YOL142W	NIT2	P47016	307 aa		5.83	□□□□□ -1.48
RRP40	YOL142W	ENP2	P48234	707 aa	Known RBP	5.83	□□□□□ -1.48
RRP40	YOL142W	APM1	Q00776	475 aa	Predicted RBP	5.83	□□□□□ -1.48
RRP40	YOL142W	GIS1	Q03833	894 aa		5.83	□□□□□ -1.48
RRP40	YOL142W	TRE2	Q08693	809 aa		5.83	□□□□□ -1.48
RRP40	YOL142W	AEP2	P22136	580 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	ADY2	P25613	283 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	DGR2	P32330	852 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	HXT4	P32467	576 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	MTC7	P32633	139 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	MUP3	P38734	546 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	MIT1	P40002	666 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	TIM50	Q02776	476 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	HLR1	Q04429	423 aa		5.82	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms