RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	ALX1	Q15699	326 aa		12.43	□□□□□ -0.42
NECAP1-223	ENST00000640091	SUPT20H	Q8NEM7	779 aa		12.43	□□□□□ -0.42
NECAP1-223	ENST00000640091	NKX2-3	Q8TAU0	364 aa		12.43	□□□□□ -0.42
NECAP1-223	ENST00000640091	MINDY4B	A8MYZ0	360 aa		12.42	□□□□□ -0.42
NECAP1-223	ENST00000640091	MCM2	P49736	904 aa		12.42	□□□□□ -0.42
NECAP1-223	ENST00000640091	SCNN1D	P51172	638 aa		12.42	□□□□□ -0.42
NECAP1-223	ENST00000640091	GSTO1	P78417	241 aa		12.42	□□□□□ -0.42
NECAP1-223	ENST00000640091	TBC1D10C	Q8IV04	446 aa		12.42	□□□□□ -0.42
NECAP1-223	ENST00000640091	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	12.42	□□□□□ -0.42
NECAP1-223	ENST00000640091	TTF2	Q9UNY4	1162 aa	Known RBP	12.42	□□□□□ -0.42
NECAP1-223	ENST00000640091	CYP2D7	A0A087X1C5	515 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	YDJC	A8MPS7	323 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	LDHC	P07864	332 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	DHX32	Q7L7V1	743 aa	Known RBP	12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	LARGE2	Q8N3Y3	721 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	PSMD1	Q99460	953 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	SPON1	Q9HCB6	807 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	LIMCH1	Q9UPQ0	1083 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	DTNB	O60941	627 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	LARGE1	O95461	756 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	BAG3	O95817	575 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	BTD	P43251	543 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	EVX2	Q03828	476 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	TOB2	Q14106	344 aa	Predicted RBP	12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	SLC4A8	Q2Y0W8	1093 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	GRIPAP1	Q4V328	841 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	STRIP1	Q5VSL9	837 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091		Q6ZUG5	572 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	KIAA0825	Q8IV33	1275 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	TACC3	Q9Y6A5	838 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	MROH7-TTC4	A0A0A0MT08	1334 aa		12.41	□□□□□ -0.42
NECAP1-223	ENST00000640091	USP17L3	A6NCW0	530 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	USP17L4	A6NCW7	530 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	USP17L12	C9JPN9	530 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	USP17L21	D6R901	530 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	PRKCSH	P14314	528 aa	Predicted RBP	12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	DACT2	Q5SW24	774 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	USP17L1	Q7RTZ2	530 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	DCP1A	Q9NPI6	582 aa	Predicted RBP	12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	TPCN1	Q9ULQ1	816 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	KIF13B	Q9NQT8	1826 aa		12.4	□□□□□ -0.42
NECAP1-223	ENST00000640091	GPR75-ASB3	A0A0A6YYF3	556 aa		12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	HMGB1	P09429	215 aa	Known RBP	12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	FGD1	P98174	961 aa		12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	EXOSC10	Q01780	885 aa	Known RBP	12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	CTR9	Q6PD62	1173 aa		12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	NCOA7	Q8NI08	942 aa		12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	TGFBRAP1	Q8WUH2	860 aa		12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	NOL10	Q9BSC4	688 aa	Known RBP	12.4	□□□□□ -0.43
NECAP1-223	ENST00000640091	DLEC1	Q9Y238	1755 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091		B4E1Z4	1266 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	RAD17	O75943	681 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	USP5	P45974	858 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	PPP4C	P60510	307 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	PPARA	Q07869	468 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	TRDN	Q13061	729 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	ME3	Q16798	604 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	SOGA3	Q5TF21	947 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	TMED8	Q6PL24	325 aa	Predicted RBP	12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	RALYL	Q86SE5	291 aa	Known RBP	12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	BRF1	Q92994	677 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	FAM163A	Q96GL9	167 aa	Predicted RBP	12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	GPHN	Q9NQX3	736 aa	Predicted RBP	12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	TOMM22	Q9NS69	142 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	DAGLA	Q9Y4D2	1042 aa		12.39	□□□□□ -0.43
NECAP1-223	ENST00000640091	ZMYM6	O95789	1325 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	NEDD4	P46934	1319 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	IGSF3	O75054	1194 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	RRP12	Q5JTH9	1297 aa	Known RBP	12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	MFSD6	Q6ZSS7	791 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	SLF2	Q8IX21	1173 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	MB21D2	Q8IYB1	491 aa	Predicted RBP	12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	NECAB1	Q8N987	351 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	ATP8A2	Q9NTI2	1148 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	MCM9	Q9NXL9	1143 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	SUGT1	Q9Y2Z0	365 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	PCDHAC2	Q9Y5I4	1007 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	USP17L8	P0C7I0	530 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	CYP2D6	P10635	497 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	ANTXR2	P58335	489 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	STK3	Q13188	491 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	AKNAD1	Q5T1N1	836 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	MAPKAPK5	Q8IW41	473 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	IL27	Q8NEV9	243 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	TAOK3	Q9H2K8	898 aa		12.38	□□□□□ -0.43
NECAP1-223	ENST00000640091	CCDC88A	Q3V6T2	1871 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	KIAA1551	Q9HCM1	1747 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	GAK	O14976	1311 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	NFKBIE	O00221	500 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	PRC1	O43663	620 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	MCM5	P33992	734 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	IARS	P41252	1262 aa	Known RBP	12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	RHBDL3	P58872	404 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	CUL4A	Q13619	759 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	ANKRD1	Q15327	319 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	GIMAP6	Q6P9H5	292 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	CYB5R4	Q7L1T6	521 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	TEX11	Q8IYF3	940 aa		12.37	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms