RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 GAKO14976 1311 aa22.66■■□□□ 1.22
CLN3-258ENST00000637184 RAD17O75943 681 aa22.66■■□□□ 1.22
CLN3-258ENST00000637184 BTDP43251 543 aa22.66■■□□□ 1.22
CLN3-258ENST00000637184 RASSF7Q02833 373 aa22.66■■□□□ 1.22
CLN3-258ENST00000637184 SDR42E1Q8WUS8 393 aa22.66■■□□□ 1.22
CLN3-258ENST00000637184 JAKMIP1Q96N16 626 aaKnown RBP22.66■■□□□ 1.22
CLN3-258ENST00000637184 EPB41L4AQ9HCS5 686 aaPredicted RBP22.66■■□□□ 1.22
CLN3-258ENST00000637184 GPR75-ASB3A0A0A6YYF3 556 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 ZNF213O14771 459 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 ST18O60284 1047 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 PSMA5P28066 241 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 TDO2P48775 406 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 NEK4P51957 841 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 ADCK5Q3MIX3 580 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 KIAA0825Q8IV33 1275 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 TM6SF1Q9BZW5 370 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 TAF6LQ9Y6J9 622 aa22.65■■□□□ 1.22
CLN3-258ENST00000637184 CASTP20810 708 aaKnown RBP22.64■■□□□ 1.22
CLN3-258ENST00000637184 IL27Q8NEV9 243 aa22.64■■□□□ 1.22
CLN3-258ENST00000637184 SNX21Q969T3 373 aa22.64■■□□□ 1.22
CLN3-258ENST00000637184 UPF3BQ9BZI7 483 aaKnown RBP22.64■■□□□ 1.22
CLN3-258ENST00000637184 MYO3BQ8WXR4 1341 aa22.64■■□□□ 1.21
CLN3-258ENST00000637184 VIL1P09327 827 aaKnown RBP22.63■■□□□ 1.21
CLN3-258ENST00000637184 PLCG2P16885 1265 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 SCNN1DP51172 638 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 HAND2P61296 217 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 ARHGAP27Q6ZUM4 889 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 TEKT1Q969V4 418 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 DAXXQ9UER7 740 aaPredicted RBP22.63■■□□□ 1.21
CLN3-258ENST00000637184 DAGLAQ9Y4D2 1042 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 PSMD14O00487 310 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 GIMAP6Q6P9H5 292 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 RSBN1LQ6PCB5 846 aaPredicted RBP22.63■■□□□ 1.21
CLN3-258ENST00000637184 HHIPL2Q6UWX4 724 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 HSCBQ8IWL3 235 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 MRIQ9BWK5 157 aa22.63■■□□□ 1.21
CLN3-258ENST00000637184 SOCS7O14512 581 aa22.62■■□□□ 1.21
CLN3-258ENST00000637184 SH3RF3Q8TEJ3 882 aaPredicted RBP22.62■■□□□ 1.21
CLN3-258ENST00000637184 TBC1D2Q9BYX2 928 aa22.62■■□□□ 1.21
CLN3-258ENST00000637184 ATP8A2Q9NTI2 1148 aa22.62■■□□□ 1.21
CLN3-258ENST00000637184 LAMA4Q16363 1823 aa22.61■■□□□ 1.21
CLN3-258ENST00000637184 HDLBPQ00341 1268 aaKnown RBP22.61■■□□□ 1.21
CLN3-258ENST00000637184 ZSWIM6Q9HCJ5 1215 aa22.61■■□□□ 1.21
CLN3-258ENST00000637184 CYP46A1Q9Y6A2 500 aa22.61■■□□□ 1.21
CLN3-258ENST00000637184 BAZ2AQ9UIF9 1905 aaKnown RBP22.61■■□□□ 1.21
CLN3-258ENST00000637184 E7EWF7 191 aa22.61■■□□□ 1.21
CLN3-258ENST00000637184 CRKP46108 304 aa22.61■■□□□ 1.21
CLN3-258ENST00000637184 CXCL9Q07325 125 aa22.61■■□□□ 1.21
CLN3-258ENST00000637184 NEK1Q96PY6 1258 aa22.61■■□□□ 1.21
CLN3-258ENST00000637184 USP5P45974 858 aa22.6■■□□□ 1.21
CLN3-258ENST00000637184 CIAPIN1Q6FI81 312 aa22.6■■□□□ 1.21
CLN3-258ENST00000637184 BLOC1S2Q6QNY1 142 aa22.6■■□□□ 1.21
CLN3-258ENST00000637184 RUFY3Q7L099 469 aa22.6■■□□□ 1.21
CLN3-258ENST00000637184 DCP1AQ9NPI6 582 aaPredicted RBP22.6■■□□□ 1.21
CLN3-258ENST00000637184 CD2BP2O95400 341 aaKnown RBP22.59■■□□□ 1.21
CLN3-258ENST00000637184 PRELPP51888 382 aa22.59■■□□□ 1.21
CLN3-258ENST00000637184 TNIP1Q15025 636 aa22.59■■□□□ 1.21
CLN3-258ENST00000637184 STOX1Q6ZVD7 989 aa22.59■■□□□ 1.21
CLN3-258ENST00000637184 TEX11Q8IYF3 940 aa22.59■■□□□ 1.21
CLN3-258ENST00000637184 SERPINA10Q9UK55 444 aa22.59■■□□□ 1.21
CLN3-258ENST00000637184 RHBDL3P58872 404 aa22.58■■□□□ 1.21
CLN3-258ENST00000637184 ZDHHC15Q96MV8 337 aa22.58■■□□□ 1.21
CLN3-258ENST00000637184 SRCAPQ6ZRS2 3230 aa22.58■■□□□ 1.21
CLN3-258ENST00000637184 HMGB1P09429 215 aaKnown RBP22.58■■□□□ 1.2
CLN3-258ENST00000637184 CPA1P15085 419 aa22.58■■□□□ 1.2
CLN3-258ENST00000637184 RBM5P52756 815 aaKnown RBP eCLIP22.58■■□□□ 1.2
CLN3-258ENST00000637184 AGBL3Q8NEM8 1001 aa22.58■■□□□ 1.2
CLN3-258ENST00000637184 CDK5RAP2Q96SN8 1893 aa22.58■■□□□ 1.2
CLN3-258ENST00000637184 ADAMTSL1Q8N6G6 1762 aa22.57■■□□□ 1.2
CLN3-258ENST00000637184 MINDY4BA8MYZ0 360 aa22.57■■□□□ 1.2
CLN3-258ENST00000637184 LMNB1P20700 586 aa22.57■■□□□ 1.2
CLN3-258ENST00000637184 EIF6P56537 245 aaKnown RBP22.57■■□□□ 1.2
CLN3-258ENST00000637184 TGFBRAP1Q8WUH2 860 aa22.57■■□□□ 1.2
CLN3-258ENST00000637184 GMLQ99445 158 aa22.57■■□□□ 1.2
CLN3-258ENST00000637184 HDAC9Q9UKV0 1011 aa22.57■■□□□ 1.2
CLN3-258ENST00000637184 ZBTB12Q9Y330 459 aaPredicted RBP22.57■■□□□ 1.2
CLN3-258ENST00000637184 RPS6KB1P23443 525 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 SLC4A3P48751 1232 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 MCM2P49736 904 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 PPARAQ07869 468 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 APOBEC3HQ6NTF7 200 aaKnown RBP22.56■■□□□ 1.2
CLN3-258ENST00000637184 CTR9Q6PD62 1173 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 OGFOD1Q8N543 542 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 NBPF3Q9H094 633 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 PDRG1Q9NUG6 133 aa22.56■■□□□ 1.2
CLN3-258ENST00000637184 USP17L12C9JPN9 530 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 USP17L21D6R901 530 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 FZD9O00144 591 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 YBX3P16989 372 aaKnown RBP eCLIP22.55■■□□□ 1.2
CLN3-258ENST00000637184 TRDNQ13061 729 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 TBC1D10CQ8IV04 446 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 TTC14Q96N46 770 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 USP40Q9NVE5 1235 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 MCM9Q9NXL9 1143 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 ARPP21Q9UBL0 812 aaPredicted RBP22.55■■□□□ 1.2
CLN3-258ENST00000637184 MKRN1Q9UHC7 482 aaKnown RBP22.55■■□□□ 1.2
CLN3-258ENST00000637184 DICER1Q9UPY3 1922 aaKnown RBP22.55■■□□□ 1.2
CLN3-258ENST00000637184 K7ELQ4 463 aaPredicted RBP22.55■■□□□ 1.2
CLN3-258ENST00000637184 CTDSPL2Q05D32 466 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 RALYLQ86SE5 291 aaKnown RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms